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Table 2 Strongly up-regulated stress-responsive genes changes common to transgenic hairy B. napus cotyledons

From: The biochemical composition and transcriptome of cotyledons from Brassica napus lines expressing the AtGL3 transcription factor and exhibiting reduced flea beetle feeding

  

Expression relative to Westar

ID

Description

AtGL3 line

K-5-8 line

Biotic Stress

 bo5g027670

CORI1, ATHCOR1, ATCLH1 (CORONATINE-INDUCED 1); chlorophyllase

5.30E+07

21.57

 bra008224

pathogenesis-related thaumatin family protein

2.83

14.46

 bo2g069600

MLP28 (MLP-LIKE PROTEIN 28)

174.64

13.00

 bra007947

"

119.90

11.52

 bra016785

RPS5 (RESISTANT TO P. SYRINGAE 5); nucleotide binding

7.66

8.11

 bra008667

glycosyl hydrolase family 81 protein

6.06

7.46

 bo5g149860

CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)

46.71

5.28

 bra011734

ATRCCR | ACD2 (ACCELERATED CELL DEATH 2); red chlorophyll catabolite reductase

4.47

4.47

 bo9g163710

glycosyl hydrolase family 81 protein

7.85

3.96

 bo07027s010

HRT, RCY1, RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8); binds nucleotides

3.46

3.84

 bra009184

NHL3

3.83

3.57

 bo7g087120

avirulence induced gene (AIG) protein, putative

3.49

3.26

Biotic Stress Signalling

 bra031065

TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding

5.35E+14

2.49E+08

 bo8g102890

"

369.12

66.76

 bo5g027170

"

4.17

12.21

Biotic Stress Regulation of Transcription

 bra027377

RSH2 (RELA-SPOT HOMOLOG 2); GTP diphosphokinase

4.97

5.09

 bo5g131760

"

3.24

3.25

PR proteins General

 bo8g091760

disease resistance protein (TIR-NBS-LRR class), putative

5.81

6.67

 bra005378

disease resistance family protein

3.09

6.40

 bo6g007620

molecular_function unknown; LOCATED IN: endomembrane system

3.94

5.00

 bo1g048080

disease resistance protein (NBS-LRR class), putative

1.23

3.75

PR proteins Protease Inhibitors

 bo6g010170

trypsin and protease inhibitor family protein / Kunitz family protein

165.56

3.67

 bo6g010250

"

11.99

3.54

 bo6g010100

"

113.13

3.33

 bra015999

"

78.81

3.25

 bra037702

trypsin inhibitor, putative

18.46

1.40

 bra016073

trypsin and protease inhibitor family protein / Kunitz family protein

49.47

1.07

Wounding

 bra034157

WI12, SAG20 (SENESCENCE ASSOCIATED GENE 20)

1.07E+301

1.07E+301

 bra029887

"

2.93E+05

4.53E+04

 bra010381

wound-responsive protein-related

6697.92

76.02

 bo7g111980

"

5.51

10.78

 bo8g054160

"

6.39

9.56

Abiotic Stress General

 bo01463s030

benzodiazepine receptor-related

1.90E+04

4.85E+05

 bra021442

"

798.78

32627.32

 bra007841

unknown protein

388.29

266.92

 bo8g099690

"

96.36

115.05

 bo4g154720

"

2.96

6.57

Heat responsive

 bo1g138440

DNAJ heat shock N-terminal domain-containing protein

1.25E+15

7.51E+23

 bo9g026330

DNAJ heat shock protein, putative

6642.31

1.68E+11

 bra037247

"

7768.93

1.62E+10

 bo7g117750

DNAJ heat shock N-terminal domain-containing protein (J11)

1.46E+08

7.57E+09

 bra039384

DNAJ heat shock N-terminal domain-containing protein

1238.27

1.74E+06

 bra011656

DNAJ heat shock N-terminal domain-containing protein (J11)

216.64

2.14E+04

 bo1g005990

"

415.52

1.04E+04

 bra034691

DNAJ heat shock N-terminal domain-containing protein

12.28

139.25

 bra017744

DNAJ heat shock N-terminal domain-containing protein (J11)

18.63

77.88

 bra020505

DNAJ heat shock protein, putative

8.76E+04

24.75

 bo5g132640

DNAJ heat shock N-terminal domain-containing protein

5.58

23.31

 bra011735

ATHSF4 | HSF4 (HEAT SHOCK FACTOR 4); DNA binding /transcription repressor

7.14E+04

18.15

 bra018216

17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)

47.14

12.92

 bo2g158600

DNAJ heat shock protein, putative

788.57

7.39

 bo8g066630

Hsp70b (heat shock protein 70B); ATP binding

6.69

7.32

 bo4g169420

17.6 kDa class I small heat shock protein (HSP17.6B-CI)

13.24

7.18

 bo8g097710

DNAJ heat shock N-terminal domain-containing protein

3.07

5.16

 bra016644

Hsp70b (heat shock protein 70B); ATP binding

4.04

4.31

 bo1g134560

DNAJ heat shock N-terminal domain-containing protein

8.46

3.95

 bo2g029130

heat shock protein-related

4.61

3.81

 bra004457

DNAJ heat shock N-terminal domain-containing protein

2.72

3.75

 bra003592

J8; heat shock protein binding / unfolded protein binding

4.72

3.70

 bra020419

heat shock protein-related

4.29

3.60

 bo9g176930

DNAJ heat shock N-terminal domain-containing protein

4.42

3.46

 bo3g091720

HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding

4.25

3.29

 bo8g102330

DNAJ heat shock family protein

4.19

3.10

Cold responsive

 bra017742

CSDP1 (cold shock domain protein 1); RNA/single/double-stranded DNA binding

1160.12

131.40

 bo7g117730

"

1.31E+14

8.31

 bra013087

WCOR413-LIKE, FL3-5A3 | COR413-PM1

14.61

2.84

Drought and salt responsive

 bo3g052160

early-responsive to dehydration protein-related / ERD protein-related

177.05

1.43E+11

 bra039623

ATCOAD (4-phosphopantetheine adenylyltransferase)

4.62

5.42

 bo6g004950

QUA2 | TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase

3.50

3.64

 bo4g154160

hydrophobic protein, putative / low temperature-salt responsive

3.15

3.24

Abiotic Stress unspecified

 bo8g052730

PHOS34 | universal stress protein (USP) family protein

9.63

35.62

 bo2g069600

MLP28 (MLP-LIKE PROTEIN 28)

174.64

13.00

 bo7g111350

PHOS34 | universal stress protein (USP) family protein

6.84

12.10

 bra007947

MLP28 (MLP-LIKE PROTEIN 28)

119.90

11.52

 bra008745

universal stress protein (USP) family protein

4.45

4.83

 bo5g002660

ozone-responsive stress-related protein, putative

4.21

4.15

 bra022721

PHOS34 | universal stress protein (USP) family protein

4.15

3.76

 bo9g165720

"

3.08

3.60

 bo3g039740

"

3.31

3.05

 bo6g020120

"

3.27

2.94

  1. aCotyledon values are arranged from highest expression to lowest expression within each functional category using the K-5-8 line.