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Table 1 Description of 20 EST-SSR markers used to classify 180-accession panel of Ocimum spp.

From: Population structure, genetic diversity and downy mildew resistance among Ocimum species germplasm

MarkerID Genbank/Contg ID Repeat Motif Alleles PIC Product Size LG Position (cM)
OBNJR2sg33 DY333933 (AC)16 19 0.01-0.45 271-299 14 82.7
OBNJR2cn29 Contig1138 (AC)16 11 0.02-0.45 246-448 13 54.6
OBNJR2sg04 DY343638 (GA)17 27 0.01-0.48 268-357 13 40.2
OBNJR2sg30 DY336727 (AG)22 20 0.01-0.42 241-279   
OBNJR3sg124 DY331703 (GCC)6 11 0.01-0.40 161-327   
OBNJR3sg19 DY343509 (TCA)6 6 0.01-0.46 195-432 6 18.9
OBNJR3cn298 Contig2510 (CTA)6 9 0.01-0.42 298-322   
OBNJR3cn359 Contig2911 (GGC)6 11 0.01-0.31 161-292   
OBNJR3cn362 Contig2969 (TGA)6 7 0.02-0.45 225-243 3 78.0
OBNJR3sg155 DY325572 (GTT)7 8 0.02-0.40 188-263   
OBNJR3sg168 DY323726 (GAA)7 11 0.01-0.44 297-390   
OBNJR3sg113 DY335879 (CCT)7 12 0.01-0.32 313-392   
OBNJR3cn56 Contig582 (AGG)7 10 0.01-0.45 169-240 3 84.7
OBNJR3cn74 Contig715 (CAG)7 12 0.01-0.43 211-244   
OBNJR3sg145 DY328393 (GCT)8 15 0.01-0.45 271-313   
OBNJR3cn03 Contig100 (CCA)10 15 0.01-0.44 198-262   
OBNJR3cn210 Contig1890 (AAG)11 14 0.01-0.43 266-302   
OBNJR3cn240 Contig2142 (ATA)16 24 0.01-0.37 254-370 19 88.7
OBNJR3sg13 DY344184 (ACA)10 14 0.01-0.36 271-312   
OBNJR4cn17 Contig2461 (AAAT)5 13 0.01-0.41 164-365