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Fig. 6 | BMC Plant Biology

Fig. 6

From: UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

Fig. 6

Scatterplots showing presence/absence in E. indica (AA genome) of GBS tags mapped in E. coracana (AABB genome). Linkage group designations are given on the right-hand side of each graph. GBS tags are ordered by map position (distance in cM). Tags that were present in at least two of the three E. indica accessions analyzed were placed at position ‘2’ on the Y-axis. Tags that were absent from all three E. indica accessions analyzed were placed at position ‘0’ on the Y-axis. GBS tags located on the B-genome of E. coracana are absent from E. indica. GBS tags on the A-genome of E. coracana are predominantly present (conserved tag) but can be absent from E. indica (polymorphism at restriction site, tag not amplified due to a large insertion, or tag not sequenced)

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BMC Plant Biology

ISSN: 1471-2229

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