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Table 1 Schematic representation of the approach used to consolidate SNPs within the same GBS reference tag

From: UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

 

S1b

S2

S3

S4

S5

S6

S7

S8

S9

S10

S11

S12

SNP1a

–

Bc

–

C

D

A

B

H

A

B

H

A

SNP2a

A

–

–

–

–

D

C

C

A

D

A

A

SNP3a

–

–

H

–

–

A

C

D

C

B

A

B

After consolidation

A

B

H

C

D

A

B

H

–

–

–

–

  1. aSNP1, SNP2 and SNP3 are SNPs located on the same GBS tag
  2. bS1 to S12 represent different situations
  3. cA, B, H, C, D and – are genotypic scores