Table 5 Details of quantitative trait loci identified for different traits in PR-02 population in repeated tests
Linkage group | Trait | Station/year | QTL interval (cM) | Flanking markers | LOD | Add. effecta | % phenotypic variance explained |
|---|---|---|---|---|---|---|---|
LG1a | Seed zinc conc. (ppm) | 2011 Sutherland | 22.0–31.7 | Sc4286_279148 - Sc10863_119685 | 4.32 | −0.77 | 12.72 |
LG1b | Seed protein conc. (%) | 2013 Sutherland | 28.0–29.9 | Sc7251_83132 - Sc2398_82962 | 5.00 | −0.43 | 14.55 |
LG1b | Seed protein conc. (%) | 2013 Rosthern | 28.1–29.9 | Sc7251_83132 - Sc2398_82962 | 4.97 | −0.43 | 15.85 |
LG2b | Seed starch conc. (%) | 2013 Sutherland | 1.8–24.9 | Psc16928p164 - Psc12448p512 | 5.54 | 0.49 | 21.03 |
LG2b | Seed iron conc. (ppm) | 2011 Sutherland | 3.9–6.4 | PsC3032p118 - Sc6182_10333 | 3.97 | −1.00 | 12.55 |
LG2b | Seed starch conc. (%) | 2013 Rosthern | 6.6–10.6 | Sc6182_10333 - Sc6182_10844 | 5.53 | 0.49 | 21.00 |
LG3b | 1000 seed weight (g) | 2011 Sutherland | 1.1–4.1 | Psc5404p543 - Sc16130_61478 | 3.03 | −4.96 | 6.31 |
LG3b | Days to maturity | 2011 Rosthern | 2.0–5.9 | PsC15242p262 - Sc14164_1954 | 4.46 | 1.73 | 6.97 |
LG3b | Days to maturity | 2011 Sutherland | 14.9–22.2 | PsC3603p449 - PsC2870p236 | 4.26 | −0.378 | 7.75 |
LG3b | Days to maturity | 2011 Rosthern | 15.8–18.1 | Sc3211_41467 - Sc14719_40002 | 4.80 | −1.35 | 22.87 |
LG3b | Plant height (cm) | 2011 Sutherland | 33.8–50.1 | Sc10386_31966 - Sc4095_91754 | 12.81 | −3.99 | 30.09 |
LG3b | Seed iron conc. (ppm) | 2011 Rosthern | 47.4–58.7 | PsC14749p226 - Sc5214_31535 | 6.28 | −1.03 | 20.72 |
LG3b | Seed iron conc. (ppm) | 2011 Sutherland | 47.5–58.6 | PsC14749p226 - Sc5214_31535 | 7.61 | −1.47 | 26.67 |
LG3b | 1000 seed weight (g) | 2011 Rosthern | 49.7–54.3 | PsC14749p226 - Sc5624_75165 | 4.57 | −6.84 | 11.62 |
LG3b | Plant height (cm) | 2011 Rosthern | 69.9–83.1 | PsC17487p80 - PsC17710p220 | 5.09 | −2.37 | 17.7 |
LG3b | Days to maturity | 2012 Rosthern | 70.0–91.3 | PsC17487p80 - PsC7872p386 | 7.69 | −0.49 | 24.92 |
LG3b | Plant height (cm) | 2012 Rosthern | 70.0–91.3 | PsC17487p80 - PsC7872p386 | 16.71 | −1.88 | 41.54 |
LG3b | Plant height (cm) | 2012 Sutherland | 73.2–91.6 | PsC17487p80 - PsC7872p386 | 5.47 | −1.10 | 18.17 |
LG3b | Plant height (cm) | 2011 Sutherland | 88.5–106.2 | Sc5836_42661 - PsC7220p181 | 8.10 | −2.89 | 15.93 |
LG3b | Seed zinc conc. (ppm) | 2011 Rosthern | 91.8–109.1 | PsC7872p386 - PsC7220p181 | 13.71 | 1.22 | 25.83 |
LG4a | Seed selenium conc. (ppm) | 2011 Sutherland | 20.1–35.2 | PsC28982p67 - PsC20003p140 | 11.6 | −0.13 | 18.76 |
LG4a | Yield (g/m2) | 2012 Rosthern | 20.7–38.4 | PsC16121p109 - Sc4155_71251 | 11.24 | −38.24 | 31.23 |
LG4a | Yield (g/m2) | 2011 Sutherland | 20.9–31.3 | PsC16121p109 - PsC29043p181 | 22.31 | −74.6 | 54.28 |
LG4a | Seed protein conc. (%) | 2013 Sutherland | 24.8–25.8 | PsC21191p166 - PsC10328p564 | 3.39 | −0.33 | 10.23 |
LG4a | Seed protein conc. (%) | 2013 Rosthern | 24.8–26.1 | PsC16121p109 - PsC10328p564 | 3.37 | −0.33 | 10.26 |
LG4b | Seed iron conc. (ppm) | 2011 Sutherland | 2.3–3.4 | Sc13744_115613 - PsC4914p436 | 3.34 | 0.94 | 11.14 |
LG5a | Neutral detergent fibre (%) | 2012 Sutherland | 0–6.4 | PsC20318p230 - PsC22556p240 | 5.50 | −0.17 | 19.04 |
LG5a | Neutral detergent fibre (%) | 2013 Sutherland | 6.4–19.1 | PsC22556p240 - PsC23878p158 | 5.05 | −0.28 | 16.22 |
LG5a | Neutral detergent fibre (%) | 2013 Rosthern | 15.4–17.9 | Sc11890_49833 - PsC13003p355 | 5.00 | −0.28 | 16.41 |
LG5a | Plant height (cm) | 2012 Rosthern | 18.3–25.9 | PsC13003p355 - Psc5495p478 | 4.22 | −0.8 | 8.02 |
LG5a | Seed selenium conc. (ppm) | 2011 Sutherland | 19.8–31.4 | PsC13003p355 - Sc8067_37186 | 3.51 | 0.07 | 8.39 |
LG5a | Plant height (cm) | 2012 Sutherland | 20.7–26.0 | PsC13003p355 - PsC5495p478 | 4.05 | −0.91 | 12.32 |
LG5a | Days to flowering | 2012 Rosthern | 25.1–26.6 | Sc6136_87848 - Sc10102_65751 | 3.79 | 0.23 | 12.39 |
LG5a | Days to flowering | 2011 Rosthern | 59.7–66.9 | PsC12850p269 - Psc14118p303 | 3.54 | 0.20 | 10.38 |
LG5a | Days to flowering | 2013 Sutherland | 60.2–68.2 | PsC12850p269 - Psc14118p303 | 3.86 | 0.35 | 7.30 |
LG6 | Seed iron conc. (ppm) | 2011 Rosthern | 0.2–3.0 | Sc1444_325450 - PsC10309p393 | 3.37 | 0.75 | 10.33 |
LG6 | Yield (g/m2) | 2011 Sutherland | 0.5–6.5 | PsC1405p153 - Sc10272_102016 | 3.09 | 21.41 | 4.45 |
LG6 | Seed zinc conc. (ppm) | 2011 Rosthern | 1.6–6.8 | PsC1405p153 - Sc10272_102016 | 4.52 | 0.61 | 7.10 |
LG6 | Seed zinc conc. (ppm) | 2011 Rosthern | 9.3–10.8 | Sc10272_102494 - PsC16439p299 | 4.52 | 0.61 | 8.04 |
LG6 | Yield (g/m2) | 2012 Sutherland | 19.3–24.4 | PsC1446p690 - Sc2559_47919 | 3.54 | −17.5 | 14.04 |
LG6 | Yield (g/m2) | 2012 Sutherland | 31.9–38.4 | Sc1034_360071 - PsC10745p88 | 4.73 | −22.1 | 16.18 |
LG6 | Days to flowering | 2013 Sutherland | 75.3–85.6 | Sc2871_184315 - Sc16214_15919 | 19.0 | −0.91 | 30.9 |
LG6 | Days to flowering | 2011 Rosthern | 75.3–85.6 | Sc2871_184315 - Sc16214_15919 | 9.16 | −0.35 | 17.88 |
LG6 | Days to flowering | 2013 Rosthern | 75.3–85.6 | Sc2871_184315 - Sc16214_15919 | 10.63 | −0.91 | 26.19 |
LG6 | Days to flowering | 2012 Sutherland | 79.9–85.6 | PsC11091p970 - Sc16214_15919 | 12.84 | −0.96 | 47.9 |
LG6 | Yield (g/m2) | 2011 Rosthern | 80.6–90.8 | PsC11091p970 - Sc14597_144051 | 6.20 | −26.7 | 11.82 |
LG6 | Yield (g/m2) | 2013 Rosthern | 80.8–92.9 | PsC11091p970 - Psc17032p91 | 7.96 | −33.01 | 24.62 |
LG6 | Yield (g/m2) | 2013 Sutherland | 81.2–92.8 | PsC11091p970 - Psc17032p91 | 6.61 | −33.01 | 19.38 |
LG6 | Days to maturity | 2013 Sutherland | 82.1–93.0 | PsC11091p970 _Psc17032p91 | 5.00 | −0.69 | 16.63 |
LG6 | Days to maturity | 2011 Sutherland | 82.6–92.9 | PsC11091p970 - Psc17032p91 | 5.56 | −0.49 | 10.6 |
LG6 | Days to maturity | 2013 Rosthern | 82.6–92.9 | PsC11091p970 - PsC17032p91 | 8.4 | −0.69 | 33.38 |
LG6 | Days to flowering | 2011 Sutherland | 87.9–97.3 | Sc16214_15939 - PsC25597p337 | 5.29 | −0.20 | 17.63 |
LG6 | Days to maturity | 2011 Rosthern | 96.2–98.5 | PsC18778p90 - Psc13143p353 | 3.19 | −0.71 | 9.17 |
LG6 | 1000 seed weight (g) | 2011 Rosthern | 96.5–98.3 | PsC18778p90 - Psc13143p353 | 3.58 | −6.1 | 8.05 |
LG6 | Days to maturity | 2011 Sutherland | 123.0–126.3 | Psc11465p483 - PsC21695p164 | 8.19 | −0.51 | 16.37 |
LG6 | Yield (g/m2) | 2011 Sutherland | 123.4–130.5 | PsC11465p483 - Sc13526_24967 | 3.26 | −22.19 | 4.69 |
LG6 | 1000 seed weight (g) | 2011 Sutherland | 1.4–3.4 | PsC21695p164 - Sc10011_183622 | 4.64 | −6.89 | 11.03 |
LG7 | Seed selenium conc. (ppm) | 2011 Sutherland | 11.0–12.5 | Sc14293_122324 - Sc6387_110932 | 3.20 | −0.06 | 7.14 |
LG7 | Seed selenium conc. (ppm) | 2011 Rosthern | 14.7–19.5 | Sc6387_110932 - PsC6555p155 | 3.10 | −0.04 | 15.04 |
LG7 | Neutral detergent fibre (%) | 2013 Sutherland | 40.43 - 52.31 | PsC9328p99 - PsC11241p406 | 6.07 | 0.31 | 14.64 |
LG7 | Acid detergent fibre (%) | 2013 Sutherland | 40.43 - 52.31 | PsC9328p99 - PsC11241p406 | 8.36 | 0.23 | 28.08 |
LG7 | Neutral detergent fibre (%) | 2013 Rosthern | 40.43 - 52.31 | PsC9328p99 - PsC11241p406 | 3.90 | 0.24 | 10.03 |
LG7 | Acid detergent fibre (%) | 2013 Rosthern | 40.43 - 52.31 | PsC9328p99 - PsC11241p406 | 8.65 | 0.22 | 26.21 |