Table 3 Candidate genes in the region of the QTL for yield under high infestation with MCB validated in the HIFs
From: Fine analysis of a genomic region involved in resistance to Mediterranean corn borer
Chromosome | Gene identifier | Map position B73 reference maize genome (v3) | Function |
|---|---|---|---|
8 | GRMZM5G845296 (Mybr60-MYB-related-transciption factor 60) | 113,866,855..113869756 | glutathione transferase |
8 | GRMZM2G149286 | 113,926,527..113943334 | cyclin dependent kinase activator. Nuclear localization. Involved in cell cycle regulation and cell differentiation. |
8 | GRMZM2G149211 | 113,952,252..113957006 | peroxisomal adenine nucleotide transporter involved in fatty acid beta-oxidation during early stage of postgerminative growth |
8 | GRMZM2G145752 | 114,114,229..114119298 | leucine-rich repeat family protein |
8 | GRMZM2G452671 | 114,164,077..114165013 | ribosomal protein L34 e superfamily protein |
8 | GRMZM2G074331 | 114,244,829..114245802 | UDP- Glycosyltransferase superfamily protein |
8 | GRMZM2G074377 | 114,267,974..114274299 | DNA ligase |
8 | GRMZM2G402171 | 114,305,105..114307920 | calmodulin-binding family protein |
8 | GRMZM2G084489 | 114,352,021 to 114,360,525 | CW-type Zinc Finger |
8 | GRMZM2G134230 | 114,515,312 to 114,519,184 | Succinate dehydrogenase subunit 4 |
8 | GRMZM2G140590 | 114,541,249 to 114,555,400 | Protein kinase |
8 | GRMZM5G820460 | 114,654,964 to 114,658,476 | F-box domain containing protein expressed |
8 | GRMZM2G019328 | 114,701,820 to 114,703,025 | Unknown |
8 | GRMZM2G019596 | 114,755,993 to 114,763,299 | Is a SNARE-like protein that may be involved in vesicular transport to or from the ER (VAP27–2) |
8 | GRMZM2G091980 | 114,818,764 to 114,820,923 | Unknown |
8 | GRMZM2G092000 | 114,824,628 to 114,828,403 | Unknown |
8 | GRMZM2G167689 | 114,932,399 to 114,933,896 | Transporter |
8 | GRMZM2G111396 | 115,003,446 to 115,005,892 | Encodes one of the BRGs (BOI-related gene) involved in resistance to Botrytis cinerea. (Ara) |
8 | GRMZM2G413687 | 115,165,091 to 115,166,099 | Unknown |
8 | GRMZM2G010319 | 115,297,735 to 115,298,478 | Electron transporter |
8 | GRMZM2G010452 | 115,313,249 to 115,318,961 | ARM repeat superfamily protein |
8 | GRMZM2G009370 | 115,377,779 to 115,378,532 | GTPase activating protein |
8 | GRMZM2G363253 | 115,431,793 to 115,434,496 | RING/U-box superfamily protein |
8 | GRMZM2G174370 | 115,549,501 to 115,554,290 | Tetratricopeptide repeat (TPR)-like superfamily protein |
8 | GRMZM2G166176 | 115,645,735 to 115,648,165 | glycerol-3-phosphate acyltransferase 5 |
8 | GRMZM2G160763 | 115,731,220 to 115,735,925 | Cytochrome P450 superfamily protein |
8 | GRMZM2G038401 | 115,783,521 to 115,792,131 | FTSH protease 10 |
8 | GRMZM2G055489 | 115,832,232 to 115,838,487 | Sucrose-6F-phosphate phosphohydrolase family protein |
8 | GRMZM2G082384 | 115,948,007 to 115,952,111 | ATP binding microtubule motor family protein |
8 | GRMZM2G382792 | 115,952,970 to 115,969,607 | axi 1 protein |
8 | GRMZM2G583274 | 116,015,457 to 116,016,150 | Unknown |
8 | GRMZM2G009936 | 116,060,353 to 116,062,438 | Ribosomal protein L36e family protein |
8 | GRMZM5G802801 | 116,145,133 to 116,148,059 | heat shock protein |
8 | GRMZM5G874500 | 116,148,238 to 116,153,056 | cysteinyl-tRNA synthetase |
8 | GRMZM2G008032 | 116,198,759 to 116,200,741 | Unknown |
8 | GRMZM2G700614 | 116,198,948 to 116,199,652 | Unknown |
8 | GRMZM2G007276 | 116,304,177 to 116,308,901 | ubiquitin carrier protein 7 |
8 | GRMZM2G336908 | 116,376,809 to 116,380,944 | Riboflavin biosynthesis protein ribAB |
8 | GRMZM2G035202 | 116,382,083 to 116,385,353 | Protein-tyrosine phosphatase |
8 | GRMZM5G883149 | 116,387,917 to 116,389,990 | Nonclathrin coat protein zeta1-COP |
8 | GRMZM5G886109 | 116,393,113 to 116,393,881 | Unknown |
8 | GRMZM5G879851 | 116,507,933 to 116,508,288 | Unknown |
8 | GRMZM2G178815 | 116,600,180 to 116,602,282 | Encodes a member of the MAKR (MEMBRANE-ASSOCIATED KINASE REGULATOR) gene family. MAKRs have putative kinase interacting motifs and membrane localization signals. |
8 | GRMZM2G178803 | 116,606,169 to 116,607,231 | Late embryogenesis abundant protein |
8 | GRMZM2G090563 | 116,676,898 to 116,678,720 | Encodes a candidate G-protein Coupled Receptor that is involved in the regulation of root growth by bacterial N-acyl-homoserine lactones (AHLs) and plays a role in mediating interactions between plants and microbes |
8 | GRMZM2G390400 | 116,679,405 to 116,697,581 | SAC3/GANP/Nin1/mts3/eIF-3 p25 family |
8 | GRMZM2G090732 | 116,721,653 to 116,724,613 | Protein kinase superfamily protein |
8 | GRMZM2G175349 | 116,799,287 to 116,811,743 | RING/FYVE/PHD zinc finger superfamily protein |
8 | GRMZM2G095905 | 116,824,573 to 116,827,236 | Tudor/PWWP/MBT superfamily protein |
8 | GRMZM2G095921 | 116,828,824 to 116,832,076 | Unknown |
8 | GRMZM2G422641 | 116,962,436 to 116,965,331 | Kinase interacting (KIP1-like) family protein |
8 | AC206698.2_FG002 | 116,970,513 to 116,973,542 | Unknown |
8 | GRMZM2G540732 | 116,981,901 to 116,982,818 | Unknown |
8 | GRMZM2G051050 | 117,079,361 to 117,100,135 | Ypt/Rab-GAP domain of gyp1p superfamily protein |
8 | GRMZM5G833625 | 117,101,465 to 117,101,659 | Unknown |
8 | GRMZM2G163561 | 117,138,603 to 117,140,359 | Ribosomal protein S12/S23 family protein |
8 | GRMZM2G163658 | 117,142,617 to 117,160,636 | (MCM8) minichromosome maintenance 8. Encodes a minichromosome maintenance protein that is involved with RAD51 in a backup pathway that repairs meiotic double strand breaks without giving meiotic crossovers when the major pathway, which relies on DMC1, fails. |
8 | GRMZM2G328988 | 117,273,598 to 117,288,664 | (UPL4) ubiquitin-protein ligase 4. Encodes a ubiquitin-protein ligase containing a HECT domain. |
8 | GRMZM2G064426 | 117,330,071 to 117,333,930 | Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. |
8 | GRMZM2G063896 | 117,349,862 to 117,351,374 | Histone superfamily protein |
8 | GRMZM2G068091 | 117,390,120 to 117,396,833 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
8 | GRMZM2G068192 | 117,396,878 to 117,401,717 | Protein kinase superfamily protein |
8 | GRMZM2G030673 | 117,423,561 to 117,428,562 | (CPK13) calcium-dependent protein kinase 13 |
8 | GRMZM2G173874 | 117,498,214 to 117,533,097 | (SELT) SELT-like protein precursor |
8 | GRMZM2G179728 | 117,535,930 to 117,537,364 | GDSL-like Lipase/Acylhydrolase superfamily protein |
8 | AC197705.4_FG011 | 117,605,513 to 117,618,076 | (UGP3) UDP-glucose pyrophosphorylase 3 |
8 | AC197705.4_FG003 | 117,630,364 to 117,630,962 | PEBP (phosphatidylethanolamine-binding protein) family protein |
8 | AC197705.4_FG004 | 117,632,368 to 117,632,889 | RING/U-box superfamily protein. Encodes a RING E3 ubiquitin ligase ATL80. Involved in phosphate mobilization and cold stress response in sufficient phosphate growth conditions. |
8 | AC197705.4_FG001 | 117,692,828 to 117,694,964 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
8 | AC197705.4_FG006 | 117,713,897 to 117,715,549 | RING/U-box superfamily protein |
8 | AC197705.4_FG007 | 117,718,701 to 117,722,383 | Outer membrane OMP85 family protein |
8 | AC197705.4_FG008 | 117,722,990 to 117,724,339 | Arginine N-methyltransferase, putative (DUF688) |