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Table 1 List of 42 MADS-box genes identified in P. edulis and their homologs in Oryza (aa, amino acids)

From: Genome-wide identification of MADS-box family genes in moso bamboo (Phyllostachys edulis) and a functional analysis of PeMADS5 in flowering

Name

Gene ID

Homologous

Length (aa)

Intron

Gene location

Subfamily

Predicted gene type

PeMADS1

PH01002127G0260

OsMADS3

266

7

PH01002127:173109–184,410(− stand)

Type II

AG-like

PeMADS2

PH01000306G0610

OsMADS18

257

7

PH01000306:378556–403,756(− stand)

Type II

FUL3 AP1 SQUA-like

PeMADS3

PH01000606G0250

OsMADS14

201

6

PH01000606:177440–184,284(+ stand)

Type II

FUL1 AP1 SQUA-like

PeMADS4

PH01000466G0340

OsMADS68

370

10

PH01000466:212382–216,357(− stand)

Type II

MIKC*

PeMADS5

PH01000437G0930

OsMADS22

228

7

PH01000437:618016–625,547(− stand)

Type II

SVP-like

PeMADS6

PH01000059G1270

OsMADS56

222

6

PH01000059:749594–811,731(+ stand)

Type II

TM3-like

PeMADS7

PH01000759G0450

OsMADS56

226

6

PH01000759:309532–372,975(+ stand)

Type II

TM3-like

PeMADS8

PH01000038G1550

OsMADS47

230

7

PH01000038:1113162–1,119,265(− stand)

Type II

SVP-like

PeMADS9

PH01000317G0080

OsMADS2

209

6

PH01000317:51918–54,493(+ stand)

Type II

PI GLO-like

PeMADS10

PH01001878G0200

OsMADS4

209

6

PH01001878:118831–120,592(+ stand)

Type II

PI GLO-like

PeMADS11

PH01000338G0120

OsMADS31

226

4

PH01000338:109773–112,174(+ stand)

Type II

GGM13-like

PeMADS12

PH01000616G0020

OsMADS33

190

5

PH01000616:15256–18,269(− stand)

Type II

AGL12-like

PeMADS13

PH01002743G0050

OsMADS18

257

7

PH01002743:23635–31,559(− stand)

Type II

FUL3 AP1 SQUA-like

PeMADS14

PH01000006G0210

OsMADS20

281

6

PH01000006:135925–141,334(− stand)

Type II

SQUA-like

PeMADS15

PH01005177G0100

OsMADS26

211

5

PH01005177:60648–64,034(+ stand)

Type II

AGL12-like

PeMADS16

PH01000794G0210

OsMADS4

273

5

PH01000794:136094–138,076(− stand)

Type II

PI GLO-like

PeMADS17

PH01001113G0580

OsMADS32

301

6

PH01001113:351365–358,010(− stand)

Type II

PI GLO-like

PeMADS19

PH01001303G0110

OsMADS37

183

5

PH01001303:60303–74,009(− stand)

Type II

OsMADS37-like

PeMADS20

PH01001952G0230

OsMADS1

244

7

PH01001952:162071–190,513(− stand)

Type II

AGL2-like SEP

PeMADS21

PH01000117G1210

OsMADS37

158

2

PH01000117:863423–865,146(− stand)

Type II

OsMADS37-like

PeMADS23

PH01002755G0230

OsMADS50

215

6

PH01002755:82368–142,165(− stand)

Type II

TM3-like

PeMADS24

PH01000080G0200

OsMADS55

259

7

PH01000080:117443–126,410(− stand)

Type II

SVP-like

PeMADS25

PH01003178G0150

OsMADS65

205

4

PH01003178:58826–64,955(− stand)

Type II

OsMADS37-like

PeMADS26

PH01000222G1060

OsMADS34

216

6

PH01000222:703088–717,231(+ stand)

Type II

AGL2-like SEP

PeMADS28

PH01000222G1190

OsMADS15

192

6

PH01000222:177607–183,539(+ stand)

Type II

FUL2 AP1 SQUA-like

PeMADS29

PH01001278G0330

OsMADS3

229

6

PH01001278:214488–227,311(+ stand)

Type II

AG-like

PeMADS31

PH01021006G0010

OsMADS3

229

5

PH01021006:308–2511(+ stand)

Type II

AG-like

PeMADS32

PH01003236G0170

OsMADS29

251

4

PH01003236:150540–151,005(− stand)

Type II

GGM13-like

PeMADS33

PH01001174G0480

OsMADS5

228

5

PH01001174:303844–317,831(+ stand)

Type II

AGL2-like SEP

PeMADS34

PH01002152G0120

OsMADS56

221

6

PH01002152:73202–96,884(+ stand)

Type II

TM3-like

PeMADS35

PH01000107G0570

OsMADS56

152

4

PH01000107:455631–474,775(− stand)

Type II

TM3-like

PeMADS40

PH01001750G0200

OsMADS58

230

5

PH01001750:217480–232,134(+ stand)

Type II

AG-like

PeMADS41

PH01001188G0490

OsMADS15

259

7

PH01001188:311503–334,928(+ stand)

Type II

FUL2 AP1 SQUA-like

PeMADS43

PH01000077G1380

OsMADS55

224

6

PH01000077:896999–903,795(+ stand)

Type II

SVP-like

PeAP 3

N/A

OsMADS16

200

7

PH01001272:176122–180,192(+ stand)

Type II

AP3 GLO-like

PeAGL6

N/A

OsMADS6

240

4

PH01002217: 12110–41,791(+ stand)

Type II

AGL6-like

PeMα1

N/A

OsMADS73

97

0

PH01010177:5039–5332(+ stand)

Type I

Mα

PeMα2

N/A

OsMADS73

98

0

PH01000557:531750–532,199(− stand)

Type I

Mα

PeMα3

N/A

OsMADS78

212

0

PH01000604:455236–455,874(− stand)

Type I

Mα

PeMα4

PH01000954G0350

OsMADS72

377

1

PH01000954:196706–198,735(− stand)

Type I

Mα

PeMα5

N/A

OsMADS75

184

0

PH01002999: 94340–94,894(+ stand)

Type I

Mα

PeMα6

N/A

OsMADS73

87

0

PH01224566:45–309 (− stand)

Type I

Mα