DE analysis (Comparison) | Accession | Tissue type | Group A | Group B | Genes targeted | Additional Files containing DE results | ||
---|---|---|---|---|---|---|---|---|
Development | Sample codes | Development | Sample code | |||||
1 | R35 | Ovules | Mature embryo sac | Wt_E | Spontaneous embryogenesis occurring | Wt_L | Associated with early stage autonomous seed development in R35 | Additional file 2 |
2 | R35 | Ovules and Ovaries | Mature embryo sac | Wt_E and Ovary_5 | Early to late embryos | Ovary_8, Ovary_9 and Ovary_10 | Associated with maturing embryo and endosperm in R35 | Additional file 3 |
3 | lop138 | Ovules | Mature embryo sacs | lop_E | Early to late embryos | lop_L | Associated with pollination-induced embryo development | Additional file 4 |
4 | R35 and lop138 | Ovules | Mature embryo sacs | Wt_E | Mature embryo sacs | Lop_E | Associated with differences between parthenogenesis capable accessions and the parthenogenesis incapable accession (lop138) | Additional file 5 |
R35 and lop138 | Ovules | Mature embryo sacs | Wt_E | Early to late embryos | Lop_L | |||
R35 and lop138 | Ovules | Spontaneous embryogenesis occurring | Wt_L | Mature embryo sacs | Lop_E | |||
R35 and lop138 | Ovules | Spontaneous embryogenesis occurring | Wt_L | Early to late embryos | Lop_L | |||
lop138 and A36 | Ovules | Mature embryo sacs | Lop_E | Early to late embryos | Pol_L | |||
lop138 and A36 | Ovules | Early to late embryos | Lop_L | Early to late embryos | Pol_L |