Table 3 Summary of GWAS results using both TASSEL and SUPER methods indicating the presence of the 123 SNPs significantly associated with common bunt resistance in wheat
From: Genetic architecture of common bunt resistance in winter wheat using genome-wide association study
Chro. | No. of SNPs | Position | P-value | R2 | Allele effect |
|---|---|---|---|---|---|
1A | 8 | 42,100,559–499,864,432 | 0.0000962–0.0000566 | 1.0–9.0% | (−0.26) – (− 2.70) |
1B | 31 | 137,128,882–163,096,159 | 0.00000471–0.000026 | 0.5–5.0% | (− 0.06) – (− 0.29) |
2B | 2 | 787,820,195–785,905,982 | 0.000126–0.00026 | 1.7 2.9% | (−0.10) – (− 0.12) |
3A | 10 | 51,290,068–742,470,499 | 0.0000366–0.000062 | 0.6–4.0% | (−0.06) – (− 0.30) |
3B | 2 | 6,951,948–851,809 | 0.0000882–0.000070 | 0.6–1.0% | (−0.090) – (− 0.097) |
4A | 8 | 632,236,000–738,778,127 | 0.000132015–0.0000744 | 0.9–5.0% | (−0.07) – (− 0.28) |
5A | 3 | 568,046,700–613,546,850 | 0.000102–0.00021 | 0.02–2.0% | (−0.02) – (− 0.11) |
5B | 6 | 550,732,248–701,156,196 | 0.0000485–0.000138288 | 0.7–8.0% | (−0.06) – (− 0.22) |
5D | 5 | 544,283,538–545,103,958 | 0.0000188–0.00018284 | 2.3–2.9% | (−0.135) – (− 0.143) |
6A | 5 | 431,921,921–611,857,844 | 0.000102731–0.0000121 | 0.1–5.0% | (−0.01) – (− 0.22) |
6B | 28 | 461,408,979–708,256,236 | 0.0000348–0.000198768 | 0.1–3.0% | (−0.05) – (− 0.32) |
7A | 12 | 298,990,918–722,414,973 | 0.000155936–0.0000268 | 1.0–4.0% | (−0.06) – (− 0.13) |
7B | 2 | 18,097,824–703,152,031 | 0.0000718–0.0000972 | 1.0–4.0% | (−0.17) – (− 0.29) |
7D | 1 | 595,913,707 | 0.000188716 | 3.1% | −0.17 |