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Table 1 Data summary of transcriptome and small RNA sequencing in A, B, R lines

From: A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

 

Category

CMS (A) line (S(rf1rf1))

Maintainer (B) line (N(rf1rf1))

Restorer (R) line (S(Rf1Rf1))

Transcriptome

Raw reads

294,679,040

315,123,500

310,943,666

Clean reads

283,884,614

303,319,558

299,886,248

Valid ratio

96.337%

96.254%

96.444%

Gene

59,939

Small RNA

Raw reads

8,398,232

10,531,059

9,237,460

Clean reads

5,972,568

6,453,537

5,991,695

Unique reads

2,523,938

2,370,576

186,637

Mapped sRNA

3,901,003 (65.32%)

4,364,067 (67.62%)

4,184,190 (69.83%)

Known miRNAs

27,413

25,404

14,878

Unannotated

1,572,274

1,566,417

1,327,258