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Table 2 RNA-seq analysis of WT plants and CsINV5-OE plants

From: CsINV5, a tea vacuolar invertase gene enhances cold tolerance in transgenic Arabidopsis

ID

Gene name

Description

log2FC

WT vs OE

Normal vs Cold

Normal

Cold

WT

OE

Specific up-regulated genes

Response to cold

AT1G20020

ATLFNR2

NADP (H) oxidoreductase

normal

1.03

normal

normal

AT1G55490

CPN60B

Chaperonin 60 beta

normal

1.94

1.03

2.01

AT1G63940

MDAR6

Monodehydroascorbate reductase 6

normal

1.26

normal

normal

AT1G67090

RBCS1A

Rubisco small subunit (RBCS) multigene family

normal

1.37

normal

normal

AT2G35040

AICARFT

IMPCHase bienzyme family protein

normal

1.09

normal

normal

AT2G37190

RPL12A

Ribosomal protein L11 family protein

normal

1.02

normal

normal

AT2G37220

Encodes a chloroplast RNA binding protein.

normal

1.70

normal

normal

AT3G08000

RNA-binding (RRM/RBD/RNP motifs) family protein

normal

1.13

normal

normal

AT3G13470

CPN60B2

Chaperonin-60 beta2

normal

2.45

normal

2.10

AT3G23700

SRRP1

S1 RNA-binding ribosomal protein 1

normal

1.59

normal

normal

AT3G49910

RPL26A

Translation protein SH3-like family protein

normal

1.04

normal

normal

AT3G53460

CP29

Chloroplast RNA-binding protein 29

normal

2.34

normal

1.01

AT3G54050

HCEF1

Chloroplastic fructose 1, 6-bisphosphate phosphatase.

normal

1.65

normal

normal

AT3G55280

RPL23AB

Ribosomal protein L23A

normal

1.00

normal

1.13

AT4G04330

Homologue of cyanobacterial RBCX 1

normal

1.22

normal

normal

AT4G24280

cpHsc70–1

Chloroplast heat shock protein 70–1

normal

1.47

normal

1.31

AT5G20720

CPN20

Chaperonin 20

normal

1.71

normal

1.21

AT5G50250

CP31B

Chloroplast RNA-binding protein 31B

normal

1.17

normal

1.04

AT5G54770

THI1

Thiazole requiring

normal

1.12

normal

normal

Response to osmotic

AT1G02820

ATLEA3

Late embryogenesis abundant 3 (LEA3) family protein

normal

1.40

4.77

4.95

AT1G73570

HCP-like superfamily protein

normal

1.53

normal

1.31

AT2G15970

COR413-PM1

Cold regulated 413 plasma memberane 1

normal

1.13

3.58

4.06

AT2G38230

ATPDX1.1

Pyrodoxine biosynthesis 1.1

normal

1.44

normal

normal

AT2G39800

P5CS1

Delta1-pyrroline-5-carboxylate synthase 1

normal

1.46

normal

1.83

AT2G42530

COR15B

Cold regulated 15B

normal

2.03

6.50

7.60

AT3G04770

RPSAb

40s ribosomal protein SA B

normal

1.14

normal

normal

AT3G14940

ATPPC3

Cytosolic phosphoenolpyruvate carboxylase 3

normal

1.64

1.03

1.16

AT3G55610

P5CS2

Delta1-pyrroline-5-carboxylate synthase 2

normal

1.57

normal

2.47

AT5G01410

PDX1

Aldolase-type TIM barrel family protein

normal

1.09

normal

1.22

AT5G44110

ATPOP1

Arabidopsis thaliana non-intrinsic ABC protein

normal

1.05

4.91

5.25

Response to water deprivation

AT1G02205

CER1

Fatty acid hydroxylase superfamily

normal

1.12

7.08

4.89

AT2G04030

CR88

Heat shock protein 88

normal

1.81

normal

1.80

AT3G08000

RNA-binding (RRM/RBD/RNP motifs) family protein

normal

1.13

normal

normal

Specific down-regulated genes

Response to cold

AT1G01560

ATMPK11

Member of MAP Kinase family

normal

−1.11

1.19

normal

AT1G18890

ATCDPK1

Calcium-dependent protein kinase 1

normal

−1.17

2.02

1.48

AT1G29690

CAD1

Constitutively activated cell death 1

normal

−1.82

2.12

normal

AT1G51660

ATMKK4

Mitogen-activated protein kinase kinase 4

normal

−1.12

normal

normal

AT1G52890

ANAC019

NAC domain containing protein19

normal

−2.73

1.98

normal

AT1G66400

CML23

Calmodulin-like protein

normal

−2.24

2.12

normal

AT2G04430

atnudt5

Nudix hydrolase homolog 5

normal

−1.81

2.24

normal

AT2G04450

ATNUDT6

Nucleoside diphosphates linked to some moiety X 6

normal

−1.74

3.83

2.12

AT2G17290

CPK6

Calcium-dependent protein kinase family protein

normal

−1.28

1.13

normal

AT2G22300

CAMTA3

Calcium-binding transcription activator 3

normal

−1.04

normal

normal

AT2G30250

WRKY25

WRKY DNA-binding protein

normal

−1.59

1.17

normal

AT2G38470

WRKY33

normal

−2.53

2.29

normal

AT2G40140

CZF1

Salt-inducible zinc finger 2

normal

−1.38

2.93

2.30

AT3G03050

CSLD3

Cellulose synthase like D3

normal

−1.02

1.04

normal

AT3G05360

AtRLP30

Receptor like protein 30

normal

−1.84

2.77

1.86

AT3G11820

SYP121

Syntaxin related protein 1

normal

−1.42

1.28

normal

AT3G49530

ANAC062

NAC domain containing protein 62

normal

−1.70

2.41

1.03

AT3G52400

SYP122

Syntaxin of plants 122

normal

−2.56

2.19

normal

AT4G02330

ATPMEPCRB

Pectin methylesterase 41

normal

−1.63

2.54

1.27

AT4G08500

MEKK1

MAPK/ERK Kinase Kinase 1

normal

−1.33

1.22

normal

AT4G25490

CBF1

C-repeat/DRE binding factor 1

normal

−1.26

4.98

3.72

AT4G26120

NPR2

Ankyrin repeat family protein

normal

−2.03

1.99

normal

AT5G01600

ATFER1

Arabidopsis thaliana ferretin 1

normal

−1.45

1.84

1.03

AT5G01820

ATSR1

Serine/Threonine protein Kinase 1

normal

−1.16

1.47

normal

AT5G02490

MED37D

Heat shock protein 70 (Hsp 70) family protein

normal

−2.12

4.70

3.01

AT5G13320

PBS3

AVRPPHB susceptible 3

normal

−3.20

3.67

normal

AT5G16910

ATCSLD2

Cellulose-synthase like D2

normal

−1.40

1.61

1.08

AT5G26920

CBP60G

CAM-binding protein 60-like G

normal

−3.69

3.62

normal

AT5G42050

NRP

Asparagine-rich protein

normal

−1.33

1.58

normal

AT5G57560

TCH4

Xyloglucan endotransglucosylase/hydrolase 22

normal

−2.72

2.65

1.22

AT5G58670

ATPLC1

Arabidopsis thaliana phospholipase C

normal

−1.04

normal

normal

AT5G67340

PUB2

ARM repeat superfamily protein

normal

−2.32

3.82

2.01

Response to osmotic

AT1G15520

PDR12

Arabidopsis thaliana ATP-binding cassette G40

normal

−3.13

2.13

normal

AT1G57560

AtMYB50

MYB domain protein

nd

−2.90

2.63

normal

AT3G06490

MYB108

normal

−2.81

1.42

normal

AT3G10500

anac053

NAC domain containing protein 53

normal

−1.38

normal

normal

AT3G14050

RSH2

RELA/SPOT homolog 2

normal

−2.10

2.21

1.04

AT3G22160

JAV1

Jasmonate-associated VQ motif gene 1

normal

−1.19

1.04

normal

AT3G28210

PMZ

Encodes a putative zinc finger protein

normal

−2.91

3.00

normal

AT4G15120

VQ motif-containing protein

normal

−2.57

3.07

normal

AT4G34390

XLG2

Extra-large GTP-binding protein 2

normal

−2.27

1.80

normal

AT4G36990

HSF4

Haliana heat shock factor 4

normal

−1.19

0.51

normal

AT5G13170

SAG29

Senescense-associated gene29

normal

−3.53

6.25

3.12

AT5G39720

AIG2L

Avirulence induced protein 2 like protein

nd

−2.90

2.82

normal

Response to water deprivation

AT1G08920

ESL1

Early response to dehydration SIX-like 1

normal

−1.76

3.42

2.14

AT1G02930

GSTF6

Arabidopsis thaliana gluatione s-transferase F3

normal

−1.54

normal

normal

AT1G32870

ANAC13

NAC domain containing protein 13

normal

−1.12

2.56

1.74

AT1G32940

ATSBT3.5

Subtilase family protein

normal

−1.82

2.37

1.42

AT1G32950

normal

−3.30

4.69

1.15

AT1G54160

NFYA5

Nuclear factor Y A5

normal

−1.29

1.80

1.20

AT2G38340

DREB19

Dehyration response element-binding protein 19

normal

−2.62

2.20

normal

AT2G45570

CYP76C2

Cytochrome P450

normal

−2.14

2.71

1.41

AT3G56880

VQ motif-containing protein

normal

−1.33

1.80

normal

AT4G12250

GAE5

UDP-D-glucuronate 4-epimerase

normal

−1.26

1.50

normal

AT5G54730

ATATG18F

Yeast autophagy 18 F-like protein

normal

−1.04

1.26

normal

  1. Differentially expressed genes (FDR < 0.05, log2FC) between WT plants and CsINV5-OE plants under cold conditions were annotated with the GO terms ‘response to cold’, ‘response to osmotic stress’ and ‘response to water deprivation’. The log2FC values between WT plants and CsINV5-OE plants under normal conditions, and log2FC values in CsINV5-OE plants or WT plants between normal and cold condition are also shown
  2. “—” indicates the gene has not been named; “nd” represents that the FC value was not detected in DEGs expression analysis results. “normal” indicates the gene was not differentially expressed between these two conditions. The negative value represents the gene was down-regulated, and the positive value represents the gene was up-regulated