Table 2 Selected genes differentially expressed between RHT-B1b and RHT-B1bE529K
Gene ID | Description (No. of homeologs/paralogs) a | Ave. norm. count b | FC | |
|---|---|---|---|---|
WT | MT | |||
Coleoptile | ||||
 TraesCS5A01G363200 | Fatty acyl-CoA reductase (2) | 67 | 856 | 12.8 |
 TraesCS2B01G047200 | Hfr-2-like protein | 70 | 347 | 5.0 |
 TraesCS7B01G171400 | Methionine aminopeptidase | 19 | 2 | -9.7 |
 TraesCS4A01G415400 | LOB domain-containing protein, putative | 61 | 2 | -30.0 |
First leaf | ||||
 TraesCS2B01G043600 | NBS-LRR-like resistance protein (2) | 21 | 115 | 5.4 |
 TraesCS7A01G463900 | Disease resistance protein RPM1 | 45 | 188 | 4.1 |
 TraesCS2B01G569100 | Heavy metal transport/detoxification superfamily protein (2) | 16 | 74 | 4.6 |
 TraesCS2A01G574800 | Receptor kinase-like protein (3) | 2 | 26 | 11.2 |
 TraesCS7A01G012100 | Leucine-rich repeat receptor-like protein kinase family protein | 2 | 20 | 8.9 |
 TraesCS4B01G092200 | Protein kinase family protein (2) | 24 | 107 | 4.5 |
 TraesCS3A01G438800 | Dual specificity mitogen-activated protein kinase kinase 4 | 110 | 330 | 3.0 |
 TraesCS7A01G419700 | UDP-glycosyltransferase | 95 | 12 | -7.7 |
 TraesCS2B01G091200 | IAA-amino acid hydrolase ILR1 | 10 | 1 | -13.4 |
Z49 peduncle | ||||
 TraesCS6A01G380000 | Phosphate transporter PHO1-like protein | 53 | 117 | 2.2 |
 TraesCS7A01G088700 | Sulfate transporter | 115 | 224 | 1.9 |
 TraesCS3A01G388000 | Amino acid permease (2) | 46 | 108 | 2.3 |
 TraesCS1A01G142400 | Na(+)/H(+) antiporter NhaB | 303 | 443 | 1.5 |
 TraesCS1A01G029800 | RING/U-box superfamily protein (3) | 167 | 251 | 1.5 |
 TraesCS7A01G024600 | RING finger protein | 171 | 285 | 1.7 |
 TraesCS2A01G205400 | U-box domain-containing protein | 465 | 764 | 1.6 |
 TraesCS1B01G184500 | Carboxypeptidase | 133 | 256 | 1.9 |
 TraesCS5A01G272400 | Chitinase-like protein (2) | 582 | 856 | 1.5 |
 TraesCS3B01G308000 | Carotenoid cleavage dioxygenase | 577 | 1041 | 1.8 |
 TraesCS3B01G773500LC | Arabinogalactan peptide 3 | 712 | 1567 | 2.2 |
 TraesCS3B01G347300 | Arabinogalactan peptide 14 (3) | 62 | 140 | 2.3 |
 TraesCS1A01G396700 | Fasciclin-like arabinogalactan protein | 353 | 513 | 1.5 |
 TraesCS3B01G401000 | Auxin influx transporter | 1972 | 2851 | 1.4 |
 TraesCS3A01G121300 | Auxin-responsive protein | 176 | 273 | 1.6 |
 TraesCS2B01G289800 | LOB domain-containing protein (2) | 719 | 1060 | 1.5 |
 TraesCS1A01G264000 | DNA helicase (5) | 5982 | 4213 | -1.4 |
 TraesCS2A01G103300 | ATP-dependent RNA helicase DeaD (3) | 366 | 254 | -1.4 |
 TraesCS4B01G124700LC | DNA polymerase | 898 | 622 | -1.4 |
 TraesCS3B01G137500 | DNA polymerase epsilon subunit | 342 | 231 | -1.5 |
 TraesCS3A01G117500 | DNA mismatch repair protein mutS | 242 | 162 | -1.5 |
 TraesCS7A01G140800 | DNA mismatch repair protein MutL | 314 | 216 | -1.5 |
 TraesCS1A01G409600 | Topoisomerase 1-associated factor 1 | 610 | 428 | -1.4 |
 TraesCS4B01G045000 | Homologous-pairing protein 2-like protein | 206 | 132 | -1.6 |
 TraesCS5B01G303500 | Sister chromatid cohesion 1 protein 3 | 194 | 131 | -1.5 |
 TraesCS1B01G376100 | Histone H4 | 234 | 158 | -1.5 |
 TraesCS5B01G186000 | Histone acetyltransferase type B catalytic subunit | 684 | 480 | -1.4 |
 TraesCS5A01G158800 | Histone-lysine N-methyltransferase | 238 | 148 | -1.6 |
 TraesCS7B01G302500 | Non-structural maintenance of chromosome element 4 | 100 | 53 | -1.9 |
 TraesCS4A01G234600 | Cyclin family protein (2) | 327 | 210 | -1.6 |
 TraesCS4A01G250600 | GRF1-interacting factor-like protein | 302 | 148 | -2.0 |
Z52 peduncle | ||||
 TraesCS3A01G230000 | Carbonic anhydrase (3) | 7582 | 13625 | 1.8 |
 TraesCS7A01G381100 | Fructose-bisphosphate aldolase (2) | 1567 | 2687 | 1.7 |
 TraesCS4A01G225100 | Sucrose-phosphate synthase | 236 | 556 | 2.4 |
 TraesCS2B01G048200 | Glyceraldehyde-3-phosphate dehydrogenase | 372 | 575 | 1.5 |
 TraesCS7B01G193600 | Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha | 234 | 385 | 1.6 |
 TraesCS1B01G084700 | Dihydrolipoyl dehydrogenase | 593 | 936 | 1.6 |
 TraesCS2A01G396300 | Protein SPIRAL1 (2) | 47 | 119 | 2.5 |
 TraesCS7A01G405600 | Eukaryotic aspartyl protease family protein | 39 | 119 | 3.0 |
 TraesCS7A01G111700LC | Chitinase | 20 | 52 | 2.6 |
 TraesCS7A01G789200LC | NBS-LRR disease resistance protein-like protein | 30 | 74 | 2.5 |
 TraesCS2B01G066000 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 696 | 467 | -1.5 |
 TraesCS1A01G266000 | Phospholipase A1 | 201 | 93 | -2.2 |
 TraesCS1A01G265500 | Wound-induced protease inhibitor | 38 | 4 | -9.3 |