Table 4 List of up-regulated contigs in wheat roots with high sequence similarity to genes involved in methionine metabolic process
From: Activation of a gene network in durum wheat roots exposed to cadmium
Contig ID | Creso roots | FC | Svevo roots | FC | TAIR AGI CODE | TAIR Annotation | ||
|---|---|---|---|---|---|---|---|---|
CTRL | +Cd | CTRL | +Cd | |||||
contig2986 | 230.7 | 717.3 | 3.1 | 256.7 | 648.1 | 2.5 | AT4G14716 | Acireductone dioxygenase 1 (ARD1) |
contig930 | 260.6 | 895.9 | 3.4 | 265.2 | 878.6 | 3.3 | AT4G14716 | |
contig39444 | 2.0 | 15.0 | 7.6 | 3.4 | 8.0 | 2.3 | AT1G50110 | Branched-Chain Aminotransferase 6 (BCAT6) |
contig13983 | 4.0 | 40.5 | 10.2 | 4.9 | 14.1 | 2.9 | AT3G25900 | Homocysteine S-methyltransferase (HMT-1) |
contig25432 | 1.6 | 18.0 | 11.2 | 1.6 | 10.5 | 6.7 | AT1G80360 | Methionine aminotransferase (ISS1) |
contig10788 | 13.9 | 62.8 | 4.5 | 15.4 | 44.3 | 2.9 | AT2G05830 | 5-methylthioribose kinase 1 (MTI1) |
contig10789 | 25.4 | 61.0 | 2.4 | 23.8 | 53.0 | 2.2 | AT2G05830 | |
contig32510 | 3.9 | 23.0 | 5.8 | 3.2 | 10.3 | 3.3 | AT1G49820 | S-methyl-5-thioribose kinase (MTK) |
contig5064 | 26.8 | 106.2 | 4.0 | 26.3 | 64.2 | 2.4 | AT1G49820 | |
contig80693 | 1.9 | 7.1 | 3.8 | 0.9 | 17.6 | 19.4 | AT1G49820 | |
contig11517 | 53.5 | 139.1 | 2.6 | 54.4 | 161.3 | 3.0 | AT4G34840 | Methylthioadenosine nucleosidase 2 (MTN2) |
contig11518 | 37.2 | 108.5 | 2.9 | 33.9 | 101.6 | 3.0 | AT4G34840 | |
contig14879 | 2.6 | 8.0 | 3.1 | 4.7 | 11.6 | 2.5 | AT3G53260 | Phenylalanine ammonia-lyase 2 (PAL2) |
contig104004 | 2.3 | 12.7 | 5.6 | 1.1 | 5.5 | 5.0 | AT5G53970 | Tyrosine transaminase 1 (TAT1) |
contig16069 | 30.5 | 102.5 | 3.4 | 16.9 | 49.8 | 2.9 | AT5G53970 | |
contig20039 | 32.8 | 481.2 | 14.7 | 8.1 | 272.7 | 33.8 | AT5G53970 | |
contig3346 | 14.6 | 60.0 | 4.1 | 10.0 | 30.5 | 3.1 | AT5G53970 | |
contig7573 | 10.4 | 209.0 | 20.1 | 2.2 | 121.7 | 56.5 | AT5G53970 | |
contig33842 | 4.1 | 11.4 | 2.8 | 3.1 | 7.1 | 2.3 | AT5G36160 | Tyrosine transaminase 2 (TAT2) |
contig1980 | 64.6 | 129.0 | 2.0 | 61.8 | 125.9 | 2.0 | AT5G53850 | dehydratase / enolase / phosphatase (DEP) |