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Table 1 Genetic diversity of the four Palestinian snake melon landraces using the DArTseq and SNP data sets

From: Characterizing Palestinian snake melon (Cucumis melo var. flexuosus) germplasm diversity and structure using SNP and DArTseq markers

 

Number of markers

Average PIC

Average Call rate (%)

Reproducibility (%)

Landrace

Na

Ne

I

He

P (%)

DArTseq markers

7400

0.192

92.48

99.4

GB

2.14

1.49

0.45

0.27

77.2

GS

1.98

1.45

0.40

0.24

68.5

WB

2.17

1.48

0.44

0.26

77.0

WS

2.04

1.42

0.39

0.23

69.3

SNP Markers

9750

0.234

95.24

98.2

GB

1.81

1.48

0.42

0.28

81.4

GS

1.75

1.43

0.38

0.25

75.3

WB

1.85

1.50

0.43

0.29

84.7

WS

1.81

1.45

0.40

0.26

80.7

  1. Abbreviations: Na Number of different alleles, Ne Number of effective alleles, I Shannon’s diversity index, He Expected heterozygosity, P Polymorphic loci
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BMC Plant Biology

ISSN: 1471-2229

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