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Table 1 Differentially expressed transcripts (VcRR2) adjacent to the transgene insertion position in Mu-Legacy and Mu-Legacy-T1 plants

From: An invaluable transgenic blueberry for studying chilling-induced flowering in woody plants

 

Isoform ID

logFC

logCPM

P-Value

FDR

Mu-Legacy (leaf)

 

c92529_g4_i1

2.84

5.64

8E-18

1E-13

 

c92529_g4_i2

6.17

5.04

3E-36

7E-32

 

c96767_g2_i12

4.40

2.25

1E-17

2E-13

Mu-Legacy (bud)

 

c92529_g4_i1

4.10

5.52

2E-61

9E-57

 

c92529_g4_i2

7.26

5.32

2E-98

1E-93

 

c96767_g2_i12

4.22

2.64

7E-35

1E-30

Mu-Legacy-T1 (leaf)

 

c92529_g4_i1

2.24

5.75

2E-82

4E-79

 

c92529_g4_i2

5.59

5.30

4E-227

8E-223

 

c96767_g2_i12

4.35

3.13

9E-71

1E-67

  1. FDR false discovery rate. LogFC Log2(fold change) = Log2[Mu-Legacy (or Mu-Legacy-T1)/nontransgenic Legacy]. LogCPM: Log2(counts per million)