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Table 2 Summary of RNA sequencing for 12 accessions of Ae. umbellulata

From: RNA-seq analysis reveals considerable genetic diversity and provides genetic markers saturating all chromosomes in the diploid wild wheat relative Aegilops umbellulata

Accession

Read

pairs

Filtered

read pairs (%a)

(unigenes)

N50

(bp)

Median contig length

(bp)

Total assembled bases

(Mbp)

KU-4017

3,738,403

2,515,683 (67.29%)

39,359

(37640)

1238

658

36

KU-4026

4,935,634

3,429,252 (69.48%)

20,996

(20675)

900

578.5

15.6

KU-4035

6,077,268

3,890,911 (64.02%)

57,029

(52216)

1350

654

52.9

KU-4043

4,090,151

2,392,708 (58.50%)

50,985

(48590)

1095

518

38.9

KU-4052

3,829,992

2,152,503 (56.20%)

47,320

(44869)

1179

577

39.4

KU-4103

3,875,477

2,506,545 (64.68%)

31,418

(30873)

899

507

22.1

KU-5934

5,114,283

3,507,234 (68.58%)

57,466

(52751)

1332

630

52.7

KU-5954

3,686,807

2,694,916 (73.10%)

45,164

(41780)

1365

699

44.1

KU-12180

3,455,952

2,560,779 (74.10%)

46,323

(44000)

1229

631

41.2

KU-12198

3,623,492

2,666,981 (73.60%)

50,069

(46178)

1359

655

47,7

KU-8-5

3,669,766

2,699,452 (73.56%)

52,648

(48981)

1259

654

48.2

KU-8-7

3,798,153

2,524,378 (66.46%)

59,253

(55831)

1160

524

46.9

  1. aPercentage of the number of filtered read pairs per the number of read pairs