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Table 2 List of differentially expressed conserved as well as novel miRNAs identified from LD4 vs SD4 and LD10 vs SD10 stolon transition time points comparisons. Number of putative targets predicted by psRNA target for each miRNA is also represented with (E < 3.0). None of the miRNAs were differentially expressed at LD7 vs SD7 time point comparison

From: Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions

 

miRNA

log2FoldChange

p value

p adjusted value

No. of predicted targets (E < 3.0)

Conserved miRNAs

 LD4 vs SD4

stu-miR399g-3p

−1.45

0.0006

0.0196

0

stu-miR482d-3p

−0.71

0.0003

0.0101

18

stu-miR319-3p

0.69

0.0001

0.0070

11

stu-miR8006-5p

0.80

0.0001

0.0070

3

stu-miR479

1.21

0.0000

0.0010

3

stu-miR477b-5p

1.54

0.0008

0.0210

4

stu-miR477a-5p

1.73

0.0000

0.0001

4

 LD10 vs SD10

stu-miR477b-5p

1.79

0.0003

0.0526

4

stu-miR477a-5p

2.38

0.0000

0.0001

4

Novel miRNAs

 LD4 vs SD4

stu-novel-miR302

−1.39

0.0000

0.0000

6

stu-novel-miR93

−0.65

0.0002

0.0036

3

stu-novel-miR94

−0.65

0.0002

0.0036

3

stu-novel-miR221

−0.62

0.0055

0.0353

3

stu-novel-miR278

0.53

0.0041

0.0288

0

stu-novel-miR279

0.53

0.0041

0.0288

0

stu-novel-miR276

0.61

0.0022

0.0202

17

stu-novel-miR277

0.61

0.0022

0.0202

17

stu-novel-miR40

0.66

0.0003

0.0036

0

stu-novel-miR147

1.01

0.0000

0.0000

3

 LD10 vs SD10

stu-novel-miR139

1.34

0.0002

0.0289

0

stu-novel-miR206

1.34

0.0001

0.0289

4