Table 3 Significantly differentially expressed miRNAs identified in ‘Fengzao’ compared with ‘Kyoho’
miRNA | FZ | KY | log2FoldChange | pval | padj | Target genes | Annotation from GO and interPro |
|---|---|---|---|---|---|---|---|
novel_144 | 0 | 43.34 | −4.0075 | 2.02E-14 | 1.12E-12 | ||
vvi-miR3626-3p | 0 | 29.95 | −3.582 | 2.15E-11 | 7.94E-10 | VIT_06s0061g00770 VIT_11s0016g05110 VIT_01s0244g00030 VIT_18s0076g00210 VIT_03s0088g00450 VIT_10s0116g00210 VIT_16s0050g01870 VIT_14s0083g01170 VIT_16s0050g01490 VIT_02s0087g00400 VIT_18s0001g06780 VIT_10s0116g00290 VIT_19s0014g00220 VIT_12s0028g00300 VIT_04s0023g00150 VIT_14s0066g01000 VIT_14s0171g00260 | 50s ribosomal protein l9; Ribosomal protein L9/RNase H1, N-terminal protein brittle- chloroplastic amyloplastic-like; Mitochondrial carrier domai Acyl carrier protein (ACP); Polyketide synthase, phosphopantetheine-binding domain embryogenesis-associated protein emb8; Alpha/Beta hydrolase fold fkbp12-rapamycin complex-associated protein; Phosphatidylinositol 3−/4-kinase, PIK-related kinase hypothetical protein; UBX||Ubiquitin-related domain||SEP domain CAAX amino terminal protease family protein; CAAX amino terminal protease mitochondrial carrier protein; Mitochondrial substrate/solute carrier NADH-ubiquinone oxidoreductase 13 kda-b subunit; ETC complex I subuni protein notum homolog; Alpha/Beta hydrolase fold||Pectinacetylesterase probable serine threonine-protein kinase at1g54610-like; Protein kinase, ATP binding site||Serine/threonine- plant UBX domain-containing protein 3; SEP domain big map kinase; Serine/threonine- protein kinase ||Mitogen-activated protein (MAP) kinase, ATP binding site glutamyl-tRNA amidotransferase subunit a-like; Tetratricopeptide repeat-containing domain inner membrane protein; Tetratricopeptide repeat-containing domain, embrane insertase OXA1/ALB3/YidC phosphate phosphoenolpyruvate translocator; Drug/metabolite transporter phosducin-like protein 3; Phosducin, thioredoxin-like domain |
vvi-miR3626-5p | 0 | 82.19 | −4.7967 | 1.11E-21 | 1.23E-19 | VIT_10s0116g00910 VIT_10s0003g03500 VIT_16s0050g02710 VIT_09s0018g01840 VIT_08s0007g04400 VIT_00s0179g00190 | receptor protein; Serine/threonine-protein kinase, Protein kinase, ATP binding site katanin p60 ATPase-containing subunit a-like 2-like; AAA+ ATPase domain||ATPase, AAA-type, core probable receptor-like protein kinase at1g67000-like; Wall-associated receptor kinase galacturonan-binding domain vacuolar cation proton exchanger 2; Sodium/calcium exchanger membrane region dead-box atp-dependent RNA helicase 38-like; P-loop containing nucleoside triphosphate hydrolase||RNA helicase transcription factor jumonji domain-containing protein; JmjC domain |
vvi-miR399b | 38.95 | 159.83 | −1.5213 | 0.001754 | 0.032445 | VIT_08s0007g02840 VIT_06s0004g04430 VIT_13s0067g03280 | LETM1-like protein; LETM1-like ubiquitin carrier protein; Ubiquitin-conjugating enzyme, active site high affinity inorganic phosphate transporter; General substrate transporter||Phosphate permease |
vvi-miR399e | 18.72 | 76.74 | −1.761 | 5.11E-06 | 0.000142 | VIT_13s0067g03280 VIT_08s0007g02840 VIT_13s0067g03280 VIT_06s0009g02380 | high affinity inorganic phosphate transporter; General substrate transporter||Phosphate permease LETM1-like protein; LETM1-like high affinity inorganic phosphate transporter; General substrate transporter||Phosphate permease pseudouridine-5 -phosphate glycosidase; Pseudouridine-5′-phosphate glycosidase |
vvi-miR477b-3p | 780.94 | 283.54 | 1.2555 | 0.001439 | 0.031955 | VIT_18s0001g01600 VIT_13s0084g00080 VIT_09s0002g03460 VIT_06s0004g08220 VIT_18s0001g03710 VIT_12s0055g00360 VIT_18s0041g01430 VIT_09s0002g02670 VIT_18s0122g00260 VIT_13s0158g00050 VIT_07s0104g00810 VIT_01s0010g03820 VIT_01s0010g00380 VIT_18s0001g05870 | ATP binding; Putative S-adenosyl-L-methionine-dependent methyltransferase 65-kda microtubule-associated protein 5-like protein regulator; Microtubule-associated protein, MAP65 clavaminate synthase-like protein; Taurine catabolism dioxygenase TauD/TfdA 26 s protease regulatory subunit 6b homolog; P-loop containing nucleoside triphosphate hydrolase ||ATPase tmv resistance protein n-like; Leucine-rich repeat|P-loop containing nucleoside triphosphate hydrolase protein-protein interaction regulator family protein; Pinin/SDK/MemA protein tmv resistance protein n-like; Leucine-rich repeat, typical subtype RNA methyltransferase family protein; RNA methyltransferase TrmA superkiller protein 3-like protein; Tetratricopeptide repeat hypothetical protein; Peptidase S10, serine carboxypeptidase||Alpha/Beta hydrolase fold biotin lipoate a b protein ligase family protein; Biotin/lipoate A/B protein ligase||Octanoyltransferase LRR receptor-like serine threonine-protein kinase gso1-like; Protein kinase, ATP binding site LRR receptor-like serine threonine-protein kinase gso1-like; Leucine-rich repeat, Protein kinase, ATP binding site pentatricopeptide repeat-containing protein at2g13600-like; Tetratricopeptide-like helical |