Genome-wide characterization and phylogenetic analysis of GSK gene family in three species of cotton: evidence for a role of some GSKs in fiber development and responses to stress

Wang, Lingling; Yang, Zhaoen; Zhang, Bin; Yu, Daoqian; Liu, Ji; Gong, Qian; Qanmber, Ghulam; Li, Yi; Lu, Lili; Lin, Yongjun; Yang, Zuoren; Li, Fuguang

doi:10.1186/s12870-018-1526-8

Table 2 Duplicated GSK gene pairs identified in G. hirsutum, G. arboreum, and G. raimondii

From: Genome-wide characterization and phylogenetic analysis of GSK gene family in three species of cotton: evidence for a role of some GSKs in fiber development and responses to stress

	Duplicates
Clade	Gene ID	Gene name	Position	Gene ID	Gene name	Position
II	Ga09G0899	GaSK22	Ga09: 59971361–59,974,663			Ga09: 59971879–59,974,663
II	Ga09G0899	GaSK22	Ga09: 59971361–59,974,663			Ga09: 59989139–59,991,790
II	Ga09G0899	GaSK22	Ga09: 59971361–59,974,663			Ga06: 130211141–130,213,614
II	Ga09G0900	GaSK23	Ga09: 59988594–59,991,790			Ga09: 59989139–59,991,790
II	Ga09G0900	GaSK23	Ga09: 59988594–59,991,790			Ga09: 59971879–59,974,663
II	Ga09G0900	GaSK23	Ga09: 59988594–59,991,790			Ga06: 130211141–130,213,614
IV	Ga02G1328	GaSK41	Ga02:91572951–91,576,357			Ga12: 98906373–98,909,799
II	Ga06G2433	GaSK21	Ga06:130210718–130,213,627			Ga09: 59989139–59,991,777
II	Ga06G2433	GaSK21	Ga06:130210718–130,213,627			Ga09: 59971879–59,974,650
IV	Ga12G2665	GaSK42	Ga12:98904726–98,909,799			Ga02: 91572950–91,576,342
II	Gorai.010G241600.3	GrSK21	Gr10: 61087060–61,090,705			Gr10: 61087549–61,090,443
II	Gorai.010G241600.2	GrSK21–1	Gr10: 61085419–61,090,069			Gr10: 61087549–61,090,014
III	Gorai.004G042400.1	GrSK31	Gr04: 3659148–3,665,477			Gr04: 3659643–3,665,066
III	Gorai.004G156700.2	GrSK33	Gr04: 44445510–44,453,846			Gr04: 44449136–44,452,709
III	Gorai.007G096100.1	GrSK32	Gr07: 7076952–7,083,244			Gr07: 7077235–7,082,655
I	Gorai.007G308500.3	GrSK11–1	Gr07: 52192786–52,196,322			Gr07: 52193148–52,195,963
I	Gorai.007G308500.1	GrSK11	Gr07: 52192786–52,197,103			Gr07: 52193148–52,195,963
IV	Gorai.002G218100.1	GrSK41	Gr02: 56980865–56,985,951			Gr02: 56982189–56,985,586
IV	Gorai.002G218100.1	GrSK41	Gr02: 56980865–56,985,951			Gr08: 6199127–6,202,516
IV	Gorai.008G045800.2	GrSK42–2	Gr08: 6198649–6,203,828			Gr02: 56982189–56,985,579
IV	Gorai.008G045800.2	GrSK42–2	Gr08: 6198649–6,203,828			Gr08: 6199120–6,202,516
IV	Gorai.008G045800.3	GrSK42–1	Gr08: 6198649–6,203,828			Gr02: 56982189–56,985,579
IV	Gorai.008G045800.3	GrSK42–1	Gr08: 6198649–6,203,828			Gr08: 6199120–6,202,516
IV	Gorai.008G045800.6	GrSK42	Gr08: 6198704–6,203,828			Gr02: 56982189–56,985,579
IV	Gorai.008G045800.6	GrSK42	Gr08: 6198704–6,203,828			Gr08: 6199120–6,202,516
I	Gorai.008G136600.1	GrSK12	Gr08: 38585110–38,589,107			Gr08: 38585874–38,588,662
II	Gorai.006G089300.1	GrSK22	Gr06: 32530678–32,535,037			Gr06: 32531407–32,534,186
II	Gorai.006G089300.1	GrSK22	Gr06: 32530678–32,535,037			Gr06: 32547582–32,550,218
II	Gorai.006G089300.2	GrSK22–1	Gr06: 32530521–32,535,037			Gr06: 32531410–32,534,186
II	Gorai.006G089300.2	GrSK22–1	Gr06: 32530521–32,535,037			Gr06: 32547583–32,550,218
II	Gorai.006G089400.1	GrSK23	Gr06: 32546669–32,551,023			Gr06: 32531410–32,534,186
II	Gorai.006G089400.1	GrSK23	Gr06: 32546669–32,551,023			Gr10: 61087562–61,089,975
IV	Gh_A12G0411	GhSK44	A12: 8244999–8,248,430	Gh_D01G1809	GhSK42	D14: 55472542–55,475,929
IV	Gh_A12G0411	GhSK44	A12: 8244999–8,248,430	Gh_A01G1558	GhSK41	A01: 92410496–92,413,866
IV	Gh_A12G0411	GhSK44	A12: 8244999–8,248,430	Gh_D12G0407	GhSK43	D25: 6533936–6,537,332
II	Gh_D06G2142	GhSK21	D19: 63261021–63,263,915	Gh_A06G2020	GhSK26	Scaf1340_A06: 43051–45,948
I	Gh_D11G2830	GhSK11	D24: 58071261–58,074,075	Gh_A11G3270	GhSK12	Scaf3045_A11: 160891–163,705
III	Gh_A08G0285	GhSK31	A08: 3329052–3,334,479	Gh_D08G0378	GhSK36	D21: 3871235–3,880,133
IV	Gh_D12G0407	GhSK43	D25: 6533937–6,537,332	Gh_D01G1809	GhSK42	D14: 55472542–55,475,929
IV	Gh_D12G0407	GhSK43	D25: 6533937–6,537,332	Gh_A01G1558	GhSK41	A01: 92410496–92,413,866
IV	Gh_D12G0407	GhSK43	D25: 6533937–6,537,332	Gh_A12G0411	GhSK44	A12: 8244998–8,248,430
III	Gh_D08G0378	GhSK36	D21: 3871236–3,880,133	Gh_A08G0285	GhSK31	A08: 3329051–3,334,479
I	Gh_D12G1230	GhSK14	D25: 40170076–40,172,846	Gh_A12G1106	GhSK13	A12: 64114145–64,116,909
IV	Gh_D01G1809	GhSK42	D14: 55472543–55,475,936	Gh_A01G1558	GhSK41	A01: 92410496–92,413,873
IV	Gh_D01G1809	GhSK42	D14: 55472543–55,475,936	Gh_D12G0407	GhSK43	D25: 6533943–6,537,332
II	Gh_A09G0712	GhSK25	A09: 52841598–52,844,894			A09: 52842113–52,844,894
II	Gh_A09G0712	GhSK25	A09: 52841598–52,844,894	Gh_A09G0713	GhSK24	A09: 52861923–52,864,569
II	Gh_A09G0712	GhSK25	A09: 52841598–52,844,894	Gh_D09G2469	GhSK22	Scaf4332_D22: 137948–140,717
II	Gh_A09G0712	GhSK25	A09: 52841598–52,844,894	Gh_D09G2468	GhSK23	Scaf4332_D22: 123123–125,754
II	Gh_A09G0713	GhSK24	A09: 52861382–52,864,569			A09: 52842113–52,844,894
II	Gh_A09G0713	GhSK24	A09: 52861382–52,864,569			A09: 52861923–52,864,569
II	Gh_A09G0713	GhSK24	A09: 52861382–52,864,569	Gh_D09G2469	GhSK22	Scaf4332_D22: 137948–140,717
II	Gh_A09G0713	GhSK24	A09: 52861382–52,864,569	Gh_D09G2468	GhSK23	Scaf4332_D22: 123123–125,754
III	Gh_D11G0907	GhSK33	D24: 7839230–7,844,650	Gh_A11G0778	GhSK35	A11: 7649122–7,654,545
III	Gh_A08G1158	GhSK34	A08: 81021333–81,025,764	Gh_D08G1440	GhSK32	D21: 47361119–47,366,590
IV	Gh_A01G1558	GhSK41	A01: 92410497–92,413,873	Gh_D01G1809	GhSK42	D14: 55472542–55,475,936
IV	Gh_A01G1558	GhSK41	A01: 92410497–92,413,873	Gh_D12G0407	GhSK43	D25: 6533943–6,537,332
III	Gh_A11G0778	GhSK35	A11: 7649123–7,654,545	Gh_D11G0907	GhSK33	D24: 7839229–7,844,650
III	Gh_D08G1440	GhSK32	D21: 47361120–47,366,590	Gh_A08G1158	GhSK34	A08: 81021332–81,025,764
I	Gh_A12G1106	GhSK13	A12: 64114146–64,116,909	Gh_D12G1230	GhSK14	D25: 40170075–40,172,846
II	Gh_A06G2020	GhSK26	Scaf1340_A06: 43052–45,877	Gh_D06G2142	GhSK21	D19: 63261091–63,263,915
I	Gh_A11G3270	GhSK12	Scaf3045_A11: 160892–163,705	Gh_D11G2830	GhSK11	D24: 58071260–58,074,075
II	Gh_D09G2468	GhSK23	Scaf4332_D22: 123124–126,295			A09: 52861923–52,864,569
II	Gh_D09G2468	GhSK23	Scaf4332_D22: 123124–126,295			A09: 52842113–52,844,894
II	Gh_D09G2468	GhSK23	Scaf4332_D22: 123124–126,295	Gh_D09G2469	GhSK22	Scaf4332_D22: 137948–140,717
II	Gh_D09G2469	GhSK22	Scaf4332_D22: 137949–141,233			A09: 52861923–52,864,569
II	Gh_D09G2469	GhSK22	Scaf4332_D22: 137949–141,233			A09: 52842113–52,844,894
II	Gh_D09G2469	GhSK22	Scaf4332_D22: 137949–141,233	Gh_D09G2468	GhSK23	Scaf4332_D22: 123123–125,754

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