Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification

Table 3 Number of OsCam1–1-regulated DEGs in each functional category according to GO terms

GO Term	Number of
GO Term	HT salt-responsive DEG	LT salt-responsive DEG	HT DEG	LT DEG	salt responsive DEG
photosynthesis	2	31	0	1	111
cell wall	26	52	0	2	178
lipid metabolism	30	55	1	3	233
N metabolism	4	2	0	0	15
amino acid metabolism	17	21	2	4	155
S assimilation	2	1	0	0	3
metal handling	5	6	2	1	31
secondary metabolism	35	50	9	3	185
hormone	51	27	13	6	227
co-factor and vitamin metabolism	2	5	0	1	35
tetrapyrrole synthesis	0	13	1	0	19
major CHO metabolism	7	7	2	0	61
stress	66	54	14	7	420
redox	6	16	1	2	116
polyamine metabolism	2	0	0	0	8
nucleotide metabolism	8	9	0	0	82
biodegradation of xenobiotics	2	1	0	0	44
C1-metabolism	0	3	0	1	14
miscellaneous	138	145	22	15	750
RNA regulation	126	113	26	15	1318
DNA synthesis	9	25	2	8	224
protein metabolism	130	164	28	17	1575
minor CHO metabolism	11	6	1	2	65
signaling	71	53	18	10	656
cell division	13	48	8	5	329
development	53	36	10	6	330
transport	68	67	11	6	576
not assigned	430	410	118	85	4151
glycolysis	2	0	0	0	29
fermentation	2	5	0	0	11
gluconeogenesis	3	1	0	0	7
OPP	2	1	0	0	15
TCA	2	3	0	0	52
electron transport chain	3	1	1	0	50
micro RNA	0	0	0	0	1
Total	1328	1431	290	200	12,076

ISSN: 1471-2229