Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

BMC Plant Biology

Table 2 Statistics of the assembled transcriptome from P. pinaster embryo development

	Reference transcriptome
Total assembled transcripts	67,429
ExN50^a	1653 bp
Shorter assembled transcript length (transcript)	148 bp (Pp11025)
Longer assembled transcript length (transcript)	12,752 bp (Pp28188)
Mean length	999 bp
Median length	627 bp
Transcripts without N’s bases	65,852
Mean gap percentage per transcript length	0.2%
Predicted coding transcripts	58,527
Predicted non-coding transcripts	8896

^aExN50 = transcript length metric that considers the top most highly expressed transcripts and means that at least 50% of the assembled transcript nucleotides were found in transcripts that were at least this length

ISSN: 1471-2229