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Table 1 Summary of sequencing strategies and sequences obtained

From: Comparative transcriptomics identifies patterns of selection in roses

Species

Sample

Repetition

Reads number

Reads bases (nt)

Q20 (%)

Accession code

Rosa wichuriana ‘Basye’s Thornless’ (BT)

SAMa

Total

156,722,692

14,104,983,240

95.8

_

Rep1

51,669,692

4,650,272,280

 

SAMN07808870

Rep2

53,341,618

4,800,745,620

 

SAMN07808871

Rep3

51,710,726

4,653,965,340

 

SAMN07808872

leaf_novb

Total

131,025,452

18,923,248,232

95.8

_

Rep1

42,294,066

6,100,424,928

 

SAMN07808867

Rep2

42,725,012

6,170,189,794

 

SAMN07808868

Rep3

46,006,374

6,652,633,510

 

SAMN07808869

leaf_marb

Total

134,110,978

19,389,814,312

96.1

_

Rep1

44,236,512

6,418,203,960

 

SAMN07808864

Rep2

46,651,880

6,762,697,476

 

SAMN07808865

Rep3

43,222,586

6,208,912,876

 

SAMN07808866

Rosa chinensis ‘Old Blush’ (OB)

SAMa

Total

159,834,774

14,385,129,660

95.3

_

Rep1

52,443,532

4,643,438,236

 

SAMN07808861

Rep2

53,284,740

4,800,745,624

 

SAMN07808862

Rep3

54,106,502

4,940,945,800

 

SAMN07808863

leaf_novb

Total

137,399,212

19,719,505,590

95.8

_

Rep1

44,950,340

6,501,086,190

 

SAMN07808858

Rep2

45,260,556

6,426,857,278

 

SAMN07808859

Rep3

47,188,316

6,791,562,122

 

SAMN07808860

leaf_marb

Total

130,341,518

18,669,073,728

96.7

_

Rep1

42,299,982

6,021,996,256

 

SAMN07808855

Rep2

43,001,278

6,170,274,204

 

SAMN07808856

Rep3

45,040,258

6,476,803,268

 

SAMN07808857

all other datac

 

550,108,308

63,356,156,640

95.6

_

  1. Data are sum of three biological replications. aand b, samples sequenced via Illumina pair-end methods (PE100bp for a and PE150bp for b);c, data from references (see Table 2)