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Table 1 Functional categories for up- and down-regulated genes in the DNB module of Arabidopsis flower development

From: Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

Gene name

Fold change

Transition state

Description

Transcription factors

 RAP2.6

0.73

down-regulated

AP2/B3-like, related to AP2 6(RAP2.6)

 AGL46

0.19

down-regulated

MADS box transcription factor

 AT2G31370

1.74

up-regulated

Basic-leucine zipper transcription factor

 AT5G46030

2.12

up-regulated

transcription elongation factor-like protein

 AT4G33280

0.71

down-regulated

AP2/B3-like transcriptional factor family protein

 AT1G21580

1.66

up-regulated

Zinc finger C-×8-C-×5-C-×3-H type family

 ZAP1

4.05

up-regulated

zinc-dependent activator protein-1

 WRKY36

0.07

down-regulated

WRKY DNA-binding protein

 AT1G59675

1.21

up-regulated

F-box family protein

 NAP

2.37

up-regulated

NAC-like, activated by AP3/PI(NAP)

 AT1G76590

1.63

up-regulated

PLATZ transcription factor family protein

 RIE1

0.28

down-regulated

RING-finger protein for embryogenesis

 AT4G25610

0.35

down-regulated

C2H2-like zinc finger protein

Protein kinase activity

 AT3G46270

3.83

up-regulated

receptor protein kinase-like protein

 AT3G15240

3.61

up-regulated

Serine/threonine-protein kinase WNK

 

(With No Lysine)-like protein

 AT1G67720

0.42

down-regulated

Leucine-rich repeat protein kinase family protein

 AT3G23310

0.75

down-regulated

AGC kinase family protein

Ras signaling pathway

 AGL46

0.19

down-regulated

MADS box transcription factor

Plant hormone signal transduction

 SHY2

0.61

down-regulated

AUX/IAA transcriptional regulator family protein

 AIR12

0.79

down-regulated

auxin-induced in root cultures-like protein

 IAA18

1.98

up-regulated

indole-3-acetic acid inducible 18

ABA signaling pathway

 HIS1–3

0.79

down-regulated

histone H1–3

 SLAH2

1.22

up-regulated

SLAC1 homologue 2

 AT4G25610

0.35

down-regulated

C2H2-like zinc finger protein

 AT4G33280

0.71

down-regulated

AP2/B3-like transcriptional factor family protein

 AT1G59675

1.21

up-regulated

F-box family protein