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Table 1 Most representative clones obtained with each PK primer

From: PK-profiling method for identifying the expression of resistance-associated genes in partially resistant oats to crown rust

Primer

Clones (accession no)

Size (bp)

BLASTx function (Brachypodium accession numbers)

PK1Fa

PK1Fa114 (JZ978700)

180

Multidrug and toxin extrusion transporter protein (MATE) (XP_010233738)

PK1Fa113 (JZ978701)

159

Peptidase protein (XP_00357982)

PK1Fa115 (JZ978702)

150

LRR receptor-Mixed protein kinase (XP_014758670)

PK1Fa123 (JZ978703)

67

Hypersensitive response protein (XP_003557236)

PK1Fa2312 (JZ978704)

250

Receptor-like serine/threonine-protein kinase (XP_003569123)

PK1Fa2313 (JZ978705)

137

No significant similarity found

PK1Fa2315 (JZ978706)

159

Peptidase protein (XP_003579821)

PK1Fa2321 (JZ978707)

251

Receptor-like serine/threonine-protein kinase (XP_003569123)

PK1Fa2324 (JZ978708)

261

ADP-ribosylation factor (XP_003570479)

PK1Fb

PK1Fb111 (JZ978709)

478

Cysteine-rich receptor-like protein Mixed kinase (XP_003562979)

PK1Fb113 (JZ978710)

256

Cysteine-rich receptor-like protein Mixed kinase (XP_003562978)

PK1Fb212 (JZ978711)

343

Cysteine-rich receptor-like protein Mixed kinase XP_010237455)

PK1Fb321 (JZ978712)

150

LRR receptor-Mixed protein kinase (XP_014758670)

PK3Fa

PK3Fa14 (JZ978713)

269

Pto-like interacting Mixed protein kinase (XP_003568986)

PK3Fa23 (JZ978714)

227

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (XP_003574540)

PK3Fb

PK3Fb11 (JZ978713)

269

Pto-like interacting Mixed protein kinase (XP_003568986)

PK3Fb12 (JZ978715)

224

Calcium-dependent Serine/threonine protein kinase (XP_003580397)

PK3Fb21 (JZ978714)

227

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (XP_003574540)

PK3Fb25 (JZ978716)

106

Serotonin N-acetyl protein transferase (XP_020178557.1)

PK4R1a

PK4R1a11 (JZ978717)

223

LRR receptor-like serine/threonine-protein kinase (XP_003563758)

PK4R1a13 (JZ978718)

213

LRR receptor-like Mixed protein kinase (XP_003568447)

PK4R1a14 (JZ978719)

220

LRR receptor-like Mixed protein kinase (XP_003568447)

PK4R1a15 (JZ978720)

186

Chaperone protein (XP_003569728)

PK4R1a24 (JZ978721)

132

SAGA factor (XP_003576694)

PK4R1b

PK4R1b11 (JZ978722)

256

Serine/threonine-protein kinase (XP_003566547)

PK4R1b15 (JZ978723)

184

Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) (XP_003576920)

PK4R1b21 (JZ978724)

430

Receptor serine/threonine kinase-like protein Xa21 (XP_010236334)

PK4R1b22 (JZ978725)

400

LRR Mixed kinase SERK (XP_003577373)

PK4R1b32 (JZ978726)

196

Alanyl-tRNA-synthetase (XP_003571715)

  1. No redundant clones obtained with each PK primer, GenBank accession numbers, sizes of the cloned fragments and expected functions for the most similar protein sequences of Brachypodium distachyon accessions searched by BLASTx