Transcriptomic and biochemical analysis of upland cotton (Gossypium hirsutum) and a chromosome segment substitution line from G. hirsutum × G. barbadense in response to Verticillium dahliae infection

Table 3 20 top KEGG pathways with high representation of the DEGs

Pathway	DEGs with pathway annotation				Pathway ID
Pathway	CCRI36 profile7	MBI8255 profile7	CCRI36 profile2	MBI8255 profile2	Pathway ID
Starch and sucrose metabolism	76	72	50	57	ko00500
Phenylpropanoid biosynthesis	73*	71*	49*	56*	ko00940
Plant hormone signal transduction	60*	55*	45*	58*	ko04075
Circadian rhythm - plant	59*	56*	36	48*	ko04712
Flavonoid biosynthesis	52*	42*	25	33*	ko00941
Carbon metabolism	49	38	25	37	ko01200
Stilbenoid, diarylheptanoid and gingerol biosynthesis	47*	46*	26	40*	ko00945
Limonene and pinene degradation	45*	46*	27	39*	ko00903
Ribosome	45	46	32	43	ko03010
Amino sugar and nucleotide sugar metabolism	43*	38	20	28	ko00520
Pentose and glucuronate interconversions	36	31	26	27	ko00040
Biosynthesis of amino acids	32	35	24	31	ko01230
Glycolysis/Gluconeogenesis	28*	23	9	9	ko00010
Protein processing in endoplasmic reticulum	28	20	13	22	ko04141
Pyrimidine metabolism	28	27	24	25	ko00240
Tryptophan metabolism	26*	14	12	11	ko00380
Galactose metabolism	24*	28*	6	10	ko00052
Carotenoid biosynthesis	23*	24*	13	17	ko00906
Plant-pathogen interaction	23	16	13	19	ko04626
Ubiquitin mediated proteolysis	23	16	13	18	ko04120

ISSN: 1471-2229