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Table 2 Functional annotation statistics

From: First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.)

 

PF MU16 vs UF MU16

PF MU16 vs UF MU16

PF MU16 vs UF MU16

PF MU16 vs UF MU16

PF MU16 vs UF MU16

Database

C. pepo trancriptome v3

3539 54.62%

1249 57.14%

6231

59.36%

3354

58.66%

3261

53.28%

A. thaliana genome

2177 33.60%

734

33.58%

3951

37.64%

1988

34.77%

1826

29.84%

A. thaliana péptides

2875

44.37%

995

45.52%

5122

48.79%

2701

47.24%

2564

41.90%

 NCBI Nucleotide collection nr

3581

55.27%

1255 57.41%

6276

59.79%

3748

65.55%

3194

52.19%

 Swiss prot

2398

37.01%

850

38.88%

4226

40.26%

2238

39.14%

2142

35.00%

Cucurbita pepo ssp.ovifera

3489

53.85%

1273

58.23%

5878

56.00

3247

56.79%

3331

54.43%

 IntrePro

2659

41.04%

1367

62.53%

6805

64.83%

3671

64.20%

3793

61.98%

 Gene Ontology GO term

1650

25.47%

623

28.50%

3089

29.43%

1632

28.54%

1598

26.11%

 KEGG Pathway

275

4.24%

114

5.22%

564

5.37%

312

5.46%

286

4.67%

  1. Number and percentage of DEGs annotated in each database