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Fig. 5 | BMC Plant Biology

Fig. 5

From: High-resolution DNA methylome reveals that demethylation enhances adaptability to continuous cropping comprehensive stress in soybean

Fig. 5

Heat maps of density patterns and methylation distribution of CpG, CpHpG and CpHpH contexts in different genomic regions of two soybean cultivars under different conditions. Each panel represents a separate characteristic, and n represents the number of analysed CpGs, CpHpGs or CpHpHs (per-strand depth ≥ 4) within that feature. X-axis (cytosine density) indicates the number of CpGs, CpHpGs or CpHpHs in 200 bp windows. Y-axis (methylation level) displays the mean methylation level of cytosines in the specific CpGs, CpHpGs or CpHpHs. The black line represents the methylated median value for the specific density of CpGs, CpHpGs or CpHpHs. The red zone reflects the abundance of CpGs, CpHpGs or CpHpHs that fall into bins of given methylation levels and their densities. The top blue bar chart shows the distribution of CpG, CpHpG or CpHpH densities projected onto the horizontal axis of the heat maps. The right green bar chart indicates the distribution of methylation levels, projected onto the vertical axis of the heat maps

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