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Table 1 Summary of chromosomal associations detected for the phenotype naked caryopsis

From: A tiered approach to genome-wide association analysis for the adherence of hulls to the caryopsis of barley seeds reveals footprints of selection

Mapping panel

Chromosome

 

2H

3H

6H

7H

58.8–58.9 cM

78.6 cM

91–91.2 cM

45.4–51.1 cM

65.9 cM

70.8–86.6 cM

Lr_all (435 hulled, 90 naked)

  

1 SNP

(R2 = 10.2)

  

7 SNPs

(R2 range: 9–13)

Lr_2 (178 hulled, 44 naked)

   

4 SNPs

(R2 range:(14–17)

 

4 SNPs

(R2 range: 16–21)

Lr_2 Eth (178 hulled, 28 naked)

     

4 SNPs

(R2 range: 27–34)

Lr_2 Eur (178 hulled, 16 naked)

   

5 SNPs (R2 range: 18–24.4)

 

1 SNP

(R2 = 24)

Lr_6 (257 hulled, 46 naked)

  

1 SNP

(R2 = 14.7)

  

6 SNPs

(R2 range: 12–14.9)

Lr_6Eth (257 hulled, 28 naked)

5 SNPs (R2 range: 13–15.5)

1 SNP (R2 = 13)

  

2 SNPs (R2 = 13)

1 SNP

(R2 = 14)

Lr_6Eur (257 hulled, 18 naked)

2 SNPs (R2 = 13)

 

2 SNPs

(R2 range: 13–15)

  

6 SNPs

(R2 range: 12.7–17.8)

2H 58.8–58.9 cM SNPs shared by panels

BOPA2_12_11316, BOPA2_12_21476

Lr_6Eth, Lr_6Eur

2H 91–91.2 cM SNPs shared by panels

SCRI_RS_140972

Lr_all, Lr_6, Lr_6Eur

3H 45.4–51.1 cM SNPs shared by panels

BOPA1_2391–566, BOPA1_4256–833, BOPA2_12_10532, BOPA2_12_30474

Lr_2, Lr_2Eur

7H 70.8–86.6 cM SNPs shared by panels

BOPA2_12_20685

Lr_all, Lr_6, Lr_2, Lr_2Eur, Lr_6Eur

BOPA2_12_20685, SCRI_RS_4562

Lr_all, Lr_2Eth, Lr_6, Lr_6Eth

BOPA1_1676–557, BOPA2_12_11437, BOPA2_12_11529, BOPA2_12_30301

Lr_all, Lr_6, Lr_6Eur

BOPA1_3568–149

Lr_all, Lr_2Eth