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Table 3 ORFs predicted in this study from BAC clones and partial genomic sequence

From: Identification of candidate genes responsible for the susceptibility of apple (Malus × domestica Borkh.) to Alternaria blotch

BAC clone/genome

ORF

Transcription start (bp)

Transcription end (bp)

Deduced amino acid length (aa)

Strand

Homologous protein (Species)

E-value

Accession no.

SD-178_L15

A1

2061

11,998

1679

+

PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica)

0.0

XP_008384572.2

A2

15,932

13,969

203

hypothetical protein DOTSEDRAFT_19432 (Dothistroma septosporum NZE10)

0.24

EME48939.1

A3

15,987

20,894

1411

+

PREDICTED: putative disease resistance RPP13-like protein 1 (Pyrus × bretschneideri)

0.0

XP_018507989.1

A4

25,096

26,511

214

+

PREDICTED: uncharacterized protein LOC103409892 (Malus domestica)

5.00E-132

XP_008346905.1

A5

27,488

28,157

40

+

None

A6

29,534

36,522

835

+

PREDICTED: putative disease resistance protein RGA3 isoform X2 (Pyrus × bretschneideri)

0.0

XP_009379454.1

A7

43,448

45,613

168

+

Hypothetical protein COA78_37210 (Blastopirellula sp.)

0.47

PHR87371.1

A8

50,640

55,659

1405

+

PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica)

0.0

XP_008366183.1

A9

55,769

57,610

296

+

Uncharacterized protein LOC110755101 (Prunus avium)

1.00E-104

XP_021811957.1

A10

63,542

66,456

174

+

PREDICTED: uncharacterized protein LOC103967858 isoform X1 (Pyrus × bretschneideri)

2.00E-37

XP_009379452.1

A11

71,752

74,786

650

+

PREDICTED: WEB family protein At5g55860 (Malus domestica)

0.0

XP_008384579.2

SD-241_O01

a1

Not identified

3754

222

+

PREDICTED: uncharacterized protein LOC108170510 (Malus domestica)

7.E-63

XP_017181004.1

a2

10,358

15,380

1405

+

PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica)

0.0

XP_008366183.1

a3

15,499

17,345

322

+

Uncharacterized protein LOC110755101 (Prunus avium)

5E-132

XP_021811957.1

a4

23,336

26,622

115

+

PREDICTED: uncharacterized protein LOC103967858 isoform X1 (Pyrus × bretschneideri)

1.00E-36

XP_009379452.1

a5

31,018

34,478

650

+

PREDICTED: WEB family protein At5g55860 (Malus domestica)

0.0

XP_008384579.2

a6

34,684

38,521

473

+

PREDICTED: uncharacterized protein LOC103447176 (Malus domestica)

0.0

XP_008384578.1

a7

44,893

39,592

324

+

PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1-like (Pyrus × bretschneideri)

0.0

XP_009367226.1

a8

51,499

52,557

69

PREDICTED: kinesin-like protein KIF1C (Lates calcarifer)

0.11

XP_018537717.1

a9

59,979

54,964

609

+

PREDICTED: serine/threonine-protein kinase D6PK-like (Pyrus × bretschneideri)

0.0

XP_009367228.1

a10

60,552

63,449

152

Pre-rRNA-processing protein TSR2-like (Prunus avium)

3.00E-66

XP_021818064.1

a11

69,641

64,724

353

PREDICTED: DNA-directed RNA polymerases I and III subunit rpac1-like (Malus domestica)

3.00E-164

XP_008349490.1

a12

69,866

Not Identified

325

PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica)

0.0

XP_008384580.1

GDDH13 Chr 11 partial

G1

2,740,584

2,749,771

1689

+

PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica)

0.0

XP_008384572.2

G2

2,754,217

2,752,730

125

Putative reverse transcriptase family member (Malus domestica)

2.00E-36

CBL94165.1

G3

2,754,290

2,757,403

577

Putative COBL7 (COBRA-LIKE 7) (Malus domestica)

0.0

CBL94184.1

G4

2,757,523

2,766,112

1770

+

PREDICTED: putative disease resistance protein RGA3 isoform X2 (Pyrus × bretschneideri)

0.0

XP_009379454.1

G5

2,769,661

2,774,105

1049

+

T4.15 (Malus × robusta)

0.0

CCH50976.1

G6

2,774,818

2,774,245

133

T4.14 (Malus × robusta)

3.00E-89

CCH50975.1

G7

2,774,858

2,778,564

786

+

Hypothetical protein (Malus domestica)

3.00E-149

AEJ72571.1

G8

2,778,594

2,779,821

161

+

PREDICTED: uncharacterized protein LOC103420450 (Malus domestica)

8.00E-11

XP_008356739.1

G9

2,781,742

2,780,939

49

None

G10

2,781,835

2,787,073

592

+

Putative COBL7 (COBRA-LIKE 7) (Malus domestica)

1.00E-145

CBL94184.1

G11

2,787,274

2,788,139

225

+

T4.14 (Malus × robusta)

2.00E-144

CCH50975.1

G12

2,791,526

2,788,282

1416

T4.15 (Malus × robusta)

0.0

CCH50976.1

G13

2,794,998

2,799,499

430

+

PREDICTED: uncharacterized protein LOC103438444 (Malus domestica)

3.00E-135

XP_017188663.1

G14

2,804,362

2,809,384

1405

+

PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica)

0.0

XP_008366183.1

G15

2,809,494

2,812,371

338

+

Uncharacterized protein LOC110755101 (Prunus avium)

6.00E-100

XP_021811957.1

G16

2,817,267

2,820,181

174

+

PREDICTED: uncharacterized protein LOC103967858 isoform X1 (Pyrus × bretschneideri)

2.00E-37

XP_009379452.1

G17

2,825,063

2,828,512

650

+

PREDICTED: WEB family protein At5g55860 (Malus domestica)

0.0

XP_008384579.2