Fig. 7

Analyses of lncRNAs during the photoperiodic inductive switch. a Heat maps of the lncTU distribution in the nine chromatin states and the PCFS4 target regions. The fold change was calculated based on the ratio between observed and randomly distributed lncRNAs. b Hierarchical clustering of the DE-lncTUs. c Hierarchical clustering of the dynamic DE-lncTUs. d DE-lncTUs in NAT orientation with genes differentially expressed at the same time point and corresponding potential NATs, as annotated in TAIR. e Venn diagram between the different DE-lncTU sets with FLC, SOC1 or SVP binding sites in their vicinities. f Distribution of the TFBSs of FLC, SOC1 or SVP inside (in), at the 5′ or 3′ end, overlapping on the 3′ or 5′ end of the lncTUs. g Venn diagram between DE-lncTUs in CS2, DE-lncTUs with SVP, FLC or SOC1 binding sites (TFs) in their vicinities and DE-lncTUs forming NAT couples