Table 5 Gene hits of marker-trait association (MTAs) regions identified with basic local alignment search tool (BLAST) and their annotation with high confidence by IWGSC assembly BLASTX (NCBI BLAST)
From: Genome-wide association studies of seven agronomic traits under two sowing conditions in bread wheat
Trait | Loci | Gene hit | protein | aE-value | b%ID | Protein annotation |
|---|---|---|---|---|---|---|
GNS (LS) | S2A_1050029 | TraesCS2B02G020100 | 681aa | 3.90E-15 | 97 | Phenylalanine ammonia-lyase; L-Aspartase-like |
PH (LS) | S2A_748204192 | TraesCS2D02G532600 | 776aa | 1.90E-06 | 95 | Tetratricopepetide-like helical domain superfamily |
TraesCS2D02G532100 | 772aa | 1.90E-06 | 95 | Pentatricopeptide repeat | ||
DH (LS) | S5B_586352552 | TraesCS5B02G410800 | 928aa | 8.80E-15 | 100 | Eukaryotic translation initiation factor Winged helix DNA-binding domain superfamily Proteasome component (PCI) domain |
TraesCS5A02G406000 | 923aa | 8.80E-15 | 100 | |||
TraesCS5D02G416000 | 927aa | 3.10E-14 | 97 | |||
TraesCS5B02G219100 | 928aa | 5.80E-14 | 94 | |||
TraesCS5A02G220000 | 928aa | 5.80E-14 | 94 | |||
TraesCS5D02G228100 | 928aa | 5.80E-14 | 94 | |||
GNS (NS) | S5D_503657305 | TraesCS5D02G459800 | 252aa | 3.60E-12 | 92 | helix-loop-helix (bHLH) domain |
GY (NS) | S6A_340738287 | TraesCS1A02G176100 | 599aa | 1.00E-10 | 96 | Coiled-coils |
DH (LS) | S7A_3066534 | TraesCS7A02G023900 | 333aa | 2.80E-07 | 100 | PTHR 44519 |
| Â | Â | TraesCS4A02G466400 | 381aa | 3.30E-17 | 97 | F-box-like domain superfamily |
DH (NS) | S7D_6002850 | TraesCS7D02G013900 | 220aa | 3.10E-04 | 100 | Tansmembrane helices; Coild-coils |