Table 1 Pairwise sequence identity and similarity alignments for water chestnut soymovirus-1 (WCSV-1) ORFs and other Caulimoviridae family members
Genus | Virus | Genome size (bp) | Nucleotide identity(%) | Amino acid identity(similarity)(%) | |||||
|---|---|---|---|---|---|---|---|---|---|
Full genome | ORF V | ORF I | ORF IV | ORF V | ORF VI | ORFVII | |||
Badnavirus | BSV-GF | 7263 | 42 | 26 | 20(31) | ||||
ComYMV | 7489 | 45 | 26 | 21(33) | |||||
CSSV | 7161 | 43 | 27 | 20(33) | |||||
Caulimovirus | CaMV-XinJiang | 8060 | 44 | 49 | 27(47) | 27(47) | 35(54) | 16(28) | 7(17) |
CERV | 7932 | 44 | 49 | 23(44) | 24(42) | 33(52) | 18(28) | * | |
DMV-Portland | 7916 | 45 | 41 | 28(47) | 22(35) | 29(44) | 17(33) | 7(16) | |
FMV | 7743 | 43 | 50 | 28(49) | 25(44) | 33(51) | 19(33) | 5(12) | |
Cavemovirus | CsVMV | 8159 | 46 | 52 | 19(34) | ||||
Petuvirus | PVCV | 7206 | 44 | 20 | 23(33) | ||||
Solendovirus | SPVCV-Dom1 | 8837 | 46 | 49 | 21(34) | ||||
TVCV | 7767 | 48 | 49 | 21(35) | |||||
Soymovirus | BRRV-BRRSV24 | 8265 | 50 | 59 | 34(53) | 28(47) | 46(66) | 21(35) | 25(44) |
BRRV-Coville546 | 8299 | 50 | 57 | 31(48) | 29(47) | 44(64) | 21(34) | 25(44) | |
BRRV-Darrow5 | 8302 | 51 | 58 | 31(49) | 29(46) | 46(65) | 20(34) | 25(44) | |
BRRV-NJ | 8303 | 50 | 60 | 32(51) | 27(45) | 46(66) | 20(34) | 23(39) | |
CmYLCV | 8253 | 48 | 53 | 29(52) | 27(46) | 44(62) | 17(31) | * | |
PCSV | 8174 | 52 | 55 | 48(69) | 32(51) | 50(68) | 19(38) | 31(51) | |
SbCMV | 8178 | 49 | 55 | 31(54) | 31(49) | 48(65) | 18(33) | 29(49) | |
Tungrovirus | RTBV-PH | 8002 | 46 | 27 | 19(31) | ||||