Genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in Sichuan wheat

Table 6 Summary of favorable allele in 244 wheat accessions

SNP marker	Alleles	Chr.^a	Position (bp)	Associated traits	Favorable alleles	t-test^b	Frequency
SNP marker	Alleles	Chr.^a	Position (bp)	Associated traits	Favorable alleles	t-test^b	Landrace	Cultivar
AX-110375459	C/T	1A	55,931,144	DS	TT	*	0.30	0.07
AX-108930953	C/T	1B	670,418,012	DS	CC	*	0.05	0.73
AX-111488534	T/C	1B	670,550,099	IT & DS	CC	* & ***	0.90	0.05
AX-109329567	A/G	3D	595,680,421	IT	GG	***	0.01	0.09
AX-111623511	A/G	5A	101,053,846	IT	AA	***	0.59	0.32
AX-109907430	T/C	5A	566,772,733	DS	CC	**	0.38	0.17
AX-111051502	C/T	5B	554,577,408	DS	TT	******	0.89	0.15
AX-110123238	G/C	5B	589,800,894	DS	CC	*	0.11	0.42
AX-108943926	A/G	6A	24,724,553	DS	GG	*	0.43	0.23
AX-109937061	C/T	6B	28,634,217	DS	TT	**	0.20	0.47
AX-109348608	G/A	7A	81,528,245	IT	GG	***	0.25	0.64
AX-110518451	G/A	7B	711,405,854	IT	GG	*****	0.06	0.33
Total frequency							4.19	3.67

IT, infection type; DS, disease severity
^a, chromosome
^b, significant difference in IT or/and DS between accessions with and without favorable alleles
*, significant at P < 0.5; **, significant at P < 0.01; ***, significant at P < 0.001; *****, significant at P < 0.00001; ******, significant at P < 0.000001

ISSN: 1471-2229