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Fig. 2 | BMC Plant Biology

Fig. 2

From: The repetitive DNA landscape in Avena (Poaceae): chromosome and genome evolution defined by major repeat classes in whole-genome sequence reads

Fig. 2

Repeat cluster graphs and dotplots of selected repeats in Avena species. For each repeat, the RepeatExplorer cluster is shown (left; yellow nodes represent all assembled contigs within the repeat cluster; red nodes represent members of the contig analysed in greater detail, including by amplification and in situ hybridization. A self-dotplot of the selected contig is shown in the right panel; parallel diagonals show tandem repeats. a As_16mer43bp, identified in cluster 289CL8C154. b AF226603_45bp in cluster 289CL8C248. c Cluster Ab-R18. d Ab-R19. e Ast-R87. f Ab-T145. g Ah-T118. h As-T119. i As-T153. j As-T175. k pAs120a in cluster 312CL17C141. l Ast-R171. m Ast-T116. n Ah-R31. o Ab-T159. p Ast-R176. Repeat names include species origin of the exemplar family member: Ab, Avena brevis; Ah, A. hirtula; Ast, A. strigosa; As, A. sativa and repeat type: T, tandem; R, retrotransposon

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