Skip to main content

Table 1 Quality analysis of clean reads of RNA-seq

From: RNA-seq data reveals a coordinated regulation mechanism of multigenes involved in the high accumulation of palmitoleic acid and oil in sea buckthorn berry pulp

Sample

Stage

Length of read

Number of reads

Total bases

Q20 (%)

Q30 (%)

GC (%)

N (ppm)

Mapped (%)

Line Za56 pulp

S1

142.36

42,719,700

6,081,446,055

99.33

97.53

41.10

2.24

60.86

S2

139.48

41,463,302

5,783,400,256

99.27

97.21

41.56

3.23

54.84

S3

142.98

43,184,998

6,174,487,450

99.29

97.40

41.48

2.04

64.66

S4

143.46

55,867,418

8,014,903,918

99.53

98.05

41.36

8.45

64.71

Line TF2–36 pulp

S1

144.18

48,471,784

6,988,472,233

99.58

98.25

41.80

5.70

66.25

S2

143.69

60,647,368

8,714,191,825

99.57

98.21

41.21

5.81

64.87

S3

143.59

59,674,434

8,568,834,801

99.54

98.08

41.41

4.20

65.35

S4

143.01

45,794,132

6,548,950,087

99.56

98.14

41.35

4.28

63.36