Table 1 The list of the putative CYP genes identified in G. hirsutum
Gene Name | Gene ID (NAU1) | CDS (bp) | Protein (aa) | MW (kDa) | pI | Subcellular location | Gene ID (JGI/NAU2) | Identity (%) (JGI/NAU2) |
|---|---|---|---|---|---|---|---|---|
GhCYP-1 | Gh_A01G0027 | 675 | 224 | 24.5 | 7.3 | Cyto | Gohir.A01G003000/GH_A01G0029 | 100/100 |
GhCYP-2 | Gh_A01G0031 | 516 | 171 | 18.2 | 7.9 | Cyto | Gohir.A01G003400/GH_A01G0034 | 99/99 |
GhCYP-3 | Gh_A01G1361 | 522 | 173 | 18.2 | 8.5 | Cyto | Gohir.A01G164200/GH_A01G1763 | 100/100 |
GhCYP-4 | Gh_A01G1747 | 495 | 164 | 18.0 | 8.2 | Cyto/Mito/Chlo | Gohir.A01G204600/GH_A01G2217 | 100/100 |
GhCYP-5 | Gh_A02G0528 | 708 | 235 | 26.5 | 9.8 | Mito | Gohir.A02G054200/GH_A02G0571 | 100/100 |
GhCYP-6 | Gh_A02G1526 | 1116 | 371 | 41.9 | 6.6 | Cyto | No found/GH_A02G1850 | -/100 |
GhCYP-7 | Gh_A03G0499 | 966 | 321 | 35.0 | 8.7 | Chlo | Gohir.A03G057400/GH_A03G0699 | 100/100 |
GhCYP-8 | Gh_A03G0865 | 648 | 216 | 24.5 | 6.1 | Chlo | Gohir.A03G099700/GH_A03G1148 | 100/100 |
GhCYP-9 | Gh_A03G1688 | 1221 | 406 | 45.9 | 8.8 | Cyto | Gohir.A03G191300/GH_A03G2153 | 100/100 |
GhCYP-10 | Gh_A04G1046 | 522 | 173 | 18.5 | 10.1 | Cyto | No found/GH_A04G1474 | -/100 |
GhCYP-11 | Gh_A04G1047 | 522 | 173 | 18.3 | 8.2 | Cyto | No found/GH_A04G1475 | -/100 |
GhCYP-12 | Gh_A05G0642 | 1026 | 341 | 37.6 | 8.6 | Cyto | Gohir.A05G078500/GH_A05G0800 | 74/73 |
GhCYP-13 | Gh_A05G3461 | 567 | 188 | 20.4 | 8.2 | Cyto | No found/GH_A05G4196 | -/100 |
GhCYP-14 | Gh_A05G4019 | 1836 | 611 | 70.5 | 6.2 | Nucl | Gohir.A05G003300/GH_A05G0027 | 100/100 |
GhCYP-15 | Gh_A06G0418 | 870 | 289 | 31.9 | 6.9 | Extra | Gohir.A06G049800/GH_A06G0538 | 100/100 |
GhCYP-16 | Gh_A06G0767 | 1494 | 497 | 56.1 | 8.7 | Nucl | Gohir.A06G085500/GH_A06G0934 | 100/100 |
GhCYP-17 | Gh_A07G0324 | 2373 | 790 | 89.3 | 12.0 | Nucl | Gohir.A07G038000/GH_A07G0439 | 100/99 |
GhCYP-18 | Gh_A07G0325 | 2388 | 795 | 89.9 | 11.6 | Nucl | Gohir.A07G038100/GH_A07G0440 | 93/93 |
GhCYP-19 | Gh_A07G0986 | 1866 | 621 | 70.0 | 7.0 | Cyto | Gohir.A07G108500/GH_A07G1190 | 100/100 |
GhCYP-20 | Gh_A07G2012 | 1359 | 452 | 50.0 | 4.9 | Chlo | Gohir.A07G219400/GH_A07G2484 | 100/99 |
GhCYP-21 | Gh_A08G0354 | 711 | 236 | 26.9 | 9.2 | Mito | Gohir.A08G040200/GH_A08G0443 | 100/100 |
GhCYP-22 | Gh_A08G1077 | 855 | 284 | 31.0 | 8.2 | Extra/PM/Chlo | Gohir.A08G122000/GH_A08G1462 | 88/97 |
GhCYP-23 | Gh_A08G1194 | 483 | 160 | 17.4 | 8.5 | Cyto | Gohir.A08G133100/GH_A08G1597 | 100/100 |
GhCYP-24 | Gh_A08G1470 | 1032 | 343 | 38.0 | 5.4 | Extra | Gohir.A08G162600/GH_A08G1886 | 100/100 |
GhCYP-25 | Gh_A08G1670 | 1986 | 661 | 72.8 | 10.7 | Nucl | Gohir.A08G187500/GH_A08G2136 | 94/94 |
GhCYP-26 | Gh_A09G0254 | 1308 | 435 | 47.9 | 4.6 | Cyto | Gohir.A09G026100/GH_A09G0300 | 100/100 |
GhCYP-27 | Gh_A09G0853 | 624 | 207 | 22.2 | 9.4 | Cyto/Mito | Gohir.A09G090200/GH_A09G1082 | 96/96 |
GhCYP-28 | Gh_A09G1765 | 1032 | 343 | 37.9 | 6.0 | Extra | Gohir.A09G197200/GH_A09G2134 | 100/100 |
GhCYP-29 | Gh_A10G0832 | 1089 | 362 | 40.3 | 6.7 | Cyto | Gohir.A10G092800/GH_A10G0930 | 97/96 |
GhCYP-30 | Gh_A10G1682 | 576 | 191 | 20.7 | 8.2 | Cyto | Gohir.A10G187900/GH_A10G2053 | 100/100 |
GhCYP-31 | Gh_A10G1687 | 609 | 202 | 22.1 | 8.6 | Cyto | Gohir.A10G188300/GH_A10G2060 | 90/89 |
GhCYP-32 | Gh_A10G2121 | 666 | 221 | 23.9 | 9.4 | Cyto | Gohir.A10G236300/GH_A10G2615 | 100/100 |
GhCYP-33 | Gh_A11G0678 | 996 | 331 | 37.2 | 5.3 | Extra | Gohir.A11G074800/GH_A11G0773 | 82/82 |
GhCYP-34 | Gh_A11G0987 | 705 | 234 | 26.8 | 8.9 | Mito/Nucl | Gohir.A11G108500/GH_A11G1131 | 100/100 |
GhCYP-35 | Gh_A12G0709 | 1791 | 596 | 65.3 | 8.2 | Mito/Nucl | Gohir.A12G077300/GH_A12G0891 | 100/100 |
GhCYP-36 | Gh_A12G2539 | 765 | 254 | 28.6 | 5.9 | Cyto | Gohir.A12G082500/GH_A12G0712 | 100/100 |
GhCYP-37 | Gh_A13G0333 | 1200 | 399 | 44.6 | 6.4 | Cyto | No found/GH_A13G0375 | -/100 |
GhCYP-38 | Gh_A13G0846 | 525 | 174 | 18.8 | 7.8 | Cyto | Gohir.A13G103900/GH_A13G1226 | 100/100 |
GhCYP-39 | Gh_D01G0026 | 675 | 224 | 24.6 | 7.3 | Cyto | Gohir.D01G002600/GH_D01G0028 | 100/100 |
GhCYP-40 | Gh_D01G0030 | 516 | 171 | 18.2 | 7.4 | Cyto | Gohir.D01G003100/GH_D01G0033 | 99/99 |
GhCYP-41 | Gh_D01G0206 | 780 | 259 | 28.1 | 10.3 | Chlo | Gohir.D01G020500/GH_D01G0221 | 100/100 |
GhCYP-42 | Gh_D01G1605 | 522 | 173 | 18.3 | 8.5 | Cyto | Gohir.D01G156100/GH_D01G1877 | 100/100 |
GhCYP-43 | Gh_D02G0593 | 705 | 234 | 26.3 | 9.8 | Mito | Gohir.D02G059200/GH_D02G0586 | 100/100 |
GhCYP-44 | Gh_D02G1247 | 750 | 249 | 28.4 | 8.1 | Chlo | Gohir.D02G124600/GH_D02G1353 | 98/100 |
GhCYP-45 | Gh_D02G2108 | 1233 | 410 | 46.4 | 8.6 | Cyto | Gohir.D02G212200/GH_D02G2325 | 100/99 |
GhCYP-46 | Gh_D03G0186 | 1086 | 361 | 40.6 | 5.5 | Cyto | Gohir.D03G020200/GH_D03G0207 | 99/99 |
GhCYP-47 | Gh_D03G1033 | 966 | 321 | 35.0 | 8.2 | Chlo | Gohir.D03G108800/GH_D03G1247 | 100/100 |
GhCYP-48 | Gh_D04G1620 | 522 | 173 | 18.5 | 9.6 | Cyto | Gohir.D04G164700/GH_D04G1813 | 100/100 |
GhCYP-49 | Gh_D04G1621 | 522 | 173 | 18.3 | 8.2 | Cyto | Gohir.D04G164800/GH_D04G1814 | 100/100 |
GhCYP-50 | Gh_D04G1937 | 570 | 189 | 20.5 | 8.2 | Cyto | Gohir.D04G016300/GH_D04G0183 | 100/100 |
GhCYP-51 | Gh_D05G0033 | 1836 | 611 | 70.6 | 6.0 | Nucl | Gohir.D05G003700/GH_D05G0030 | 100/100 |
GhCYP-52 | Gh_D06G0456 | 870 | 289 | 31.9 | 7.3 | Extra | Gohir.D06G049100/GH_D06G0504 | 100/100 |
GhCYP-53 | Gh_D06G2331 | 1491 | 496 | 55.9 | 8.1 | Nucl | Gohir.D06G084800/GH_D06G0925 | 100/100 |
GhCYP-54 | Gh_D07G0381 | 2367 | 788 | 89.4 | 12.0 | Nucl | Gohir.D07G042100/GH_D07G0441 | 100/99 |
GhCYP-55 | Gh_D07G0382 | 2406 | 801 | 90.5 | 11.5 | Nucl | Gohir.D07G042200/GH_D07G0442 | 98/97 |
GhCYP-56 | Gh_D07G1064 | 1866 | 621 | 70.0 | 7.1 | Cyto | Gohir.D07G112300/GH_D07G1170 | 100/100 |
GhCYP-57 | Gh_D07G2233 | 1359 | 452 | 49.8 | 4.9 | Chlo | Gohir.D07G226300/GH_D07G2429 | 100/99 |
GhCYP-58 | Gh_D08G0452 | 711 | 236 | 26.7 | 9.5 | Mito/Nucl | Gohir.D08G050300/GH_D08G0461 | 100/100 |
GhCYP-59 | Gh_D08G1359 | 768 | 255 | 27.5 | 8.4 | Chlo | Gohir.D08G143400/GH_D08G1489 | 89/88 |
GhCYP-60 | Gh_D08G1477 | 483 | 160 | 17.4 | 7.8 | Cyto | Gohir.D08G154400/GH_D08G1612 | 99/99 |
GhCYP-61 | Gh_D08G1766 | 1032 | 343 | 38.0 | 5.5 | Extra | Gohir.D08G182600/GH_D08G1902 | 100/100 |
GhCYP-62 | Gh_D08G2018 | 1965 | 654 | 72.1 | 11.3 | Nucl | Gohir.D08G205800/GH_D08G2160 | 100/99 |
GhCYP-63 | Gh_D09G0253 | 1311 | 436 | 48.1 | 4.7 | Cyto | Gohir.D09G025500/GH_D09G0307 | 100/100 |
GhCYP-64 | Gh_D09G1874 | 1032 | 343 | 37.8 | 5.5 | Extra | Gohir.D09G191800/GH_D09G2069 | 100/100 |
GhCYP-65 | Gh_D10G0925 | 1089 | 362 | 40.3 | 6.9 | Cyto | Gohir.D10G095600/GH_D10G1032 | 100/100 |
GhCYP-66 | Gh_D10G1953 | 576 | 191 | 20.6 | 8.2 | Cyto | Gohir.D10G195800/GH_D10G2172 | 100/100 |
GhCYP-67 | Gh_D10G2442 | 666 | 221 | 23.8 | 9.4 | Cyto | Gohir.D10G248100/GH_D10G2719 | 100/100 |
GhCYP-68 | Gh_D11G0793 | 996 | 331 | 37.2 | 5.5 | Extra | Gohir.D11G079500/GH_D11G0807 | 100/100 |
GhCYP-69 | Gh_D11G1133 | 705 | 234 | 26.7 | 8.9 | Mito/Nucl | Gohir.D11G113000/GH_D11G1161 | 100/100 |
GhCYP-70 | Gh_D12G0709 | 210 | 69 | 7.5 | 9.1 | Cyto/Nucl | Gohir.D06G090500/GH_D06G0997 | 98/94 |
GhCYP-71 | Gh_D12G0724 | 1791 | 596 | 65.4 | 8.2 | Cyto/Nucl | Gohir.D12G075500/GH_D12G0928 | 100/100 |
GhCYP-72 | Gh_D12G0852 | 810 | 269 | 30.5 | 6.5 | Cyto | Gohir.D12G089100/No found | 99/- |
GhCYP-73 | Gh_D12G2822 | 519 | 172 | 18.1 | 8.5 | Cyto | Gohir.D12G033300/GH_D12G0323 | 100/100 |
GhCYP-74 | Gh_D13G0372 | 1212 | 403 | 45.4 | 7.2 | Cyto | Gohir.D13G036300/GH_D13G0367 | 100/100 |
GhCYP-75 | Gh_D13G1093 | 525 | 174 | 18.8 | 7.4 | Cyto | Gohir.D13G107100/GH_D13G1170 | 100/100 |
GhCYP-76 | Gh_Sca004717G03 | 1377 | 458 | 49.9 | 6.8 | Chlo | Gohir.D11G293200/GH_A11G3184 | 100/99 |
GhCYP-77 | Gh_Sca004717G12 | 1377 | 458 | 49.9 | 5.9 | Chlo | Gohir.D11G296300/GH_D11G3210 | 100/100 |
GhCYP-78 | Gh_Sca004880G02 | 780 | 259 | 28.1 | 10.5 | Chlo | Gohir.A01G022000/GH_A01G0230 | 100/99 |
GhCYP-79 | Gh_Sca006066G02 | 513 | 170 | 18.6 | 9.4 | Cyto/Nucl | Gohir.D01G194000/GH_D01G2301 | 100/100 |