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Table 4 Sequences and positions of the SNP markers developed for the selection of pi21

From: Improving the blast resistance of the elite rice variety Kongyu-131 by updating the pi21 locus

Markers

Chr.

Position (IRGSP1.0)

Forward primer (5′-3′)

Reverse primer (5′-3′)

SNP1

4

19,354,482

TGCACCAGTATTAACAATTGA

CCATAAAACTAGATATAGAGC

SNP2

4

19,855,434

TGCTAATCCGGAATCTCGAC

TTCGAACATAAGGTGGTCGAC

InDel3

4

19,856,847

GATCCTCATCGTCGACGTCT

TTGCAGTCCTCCGGAGGCTTCT

SNP4

4

19,860,126

TGGGATAGTCATCAATGGTGC

CCATTGATGAGTCTATTGTAG

SNP5

4

19,988,873

ATAATGGGATGAGACCCATC

TGGGATCCAGATTCGTAGTCTC