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Table 4 Codon content of 20 amino acid and stop codon of 79 coding genes of 7 species

From: Comparative analyses of chloroplast genomes from 22 Lythraceae species: inferences for phylogenetic relationships and genome evolution within Myrtales

 

D. grandiflora

T.natans

L. salicaria

L. intermis

P. granatum

W. fruticosa

R. rotundifolia

Amino acid

Codon

   

RSCUa

   

Ala

GCU

1.75

1.78

1.84

1.63

1.80

1.76

1.72

Ala

GCG

0.51

0.44

0.47

0.61

0.46

0.52

0.53

Ala

GCC

0.67

0.64

0.61

0.68

0.63

0.67

0.64

Ala

GCA

1.07

1.13

1.09

1.09

1.11

1.05

1.10

Cys

UGU

1.38

1.43

1.41

1.23

1.43

1.28

1.20

Cys

UGC

0.62

0.57

0.59

0.77

0.57

0.73

0.80

Asp

GAU

1.57

1.56

1.59

1.57

1.59

1.57

1.56

Asp

GAC

0.43

0.44

0.41

0.43

0.41

0.43

0.45

Glu

GAG

0.49

0.49

0.50

0.50

0.48

0.50

0.47

Glu

GAA

1.51

1.52

1.50

1.51

1.52

1.50

1.53

Phe

UUU

1.30

1.25

1.31

1.32

1.30

1.31

1.31

Phe

UUC

0.70

0.75

0.69

0.68

0.70

0.70

0.69

Gly

GGU

1.25

1.32

1.31

1.14

1.27

1.18

1.20

Gly

GGG

0.70

0.71

0.65

0.86

0.66

0.77

0.82

Gly

GGC

0.47

0.41

0.44

0.51

0.46

0.51

0.51

Gly

GGA

1.58

1.56

1.60

1.49

1.61

1.55

1.47

His

CAC

0.50

0.56

0.51

0.51

0.47

0.49

0.55

His

CAU

1.50

1.44

1.49

1.49

1.53

1.51

1.45

Ile

AUU

1.42

1.34

1.44

1.48

1.43

1.45

1.52

Ile

AUA

0.92

1.03

0.91

0.79

0.90

0.90

0.80

Ile

AUC

0.66

0.63

0.65

0.73

0.67

0.66

0.68

Lys

AAA

1.46

1.46

1.46

1.46

1.47

1.44

1.45

Lys

AAG

0.54

0.55

0.54

0.54

0.53

0.56

0.55

Leu

CUA

1.00

1.24

1.02

1.07

1.02

1.05

1.09

Leu

CUC

0.64

0.59

0.64

0.64

0.66

0.69

0.61

Leu

CUG

0.55

0.58

0.54

0.58

0.53

0.51

0.53

Leu

CUU

1.81

1.59

1.80

1.71

1.79

1.75

1.78

Leu

UUA

1.18

1.20

1.18

1.20

1.19

1.18

1.22

Leu

UUG

0.82

0.80

0.82

0.80

0.81

0.82

0.78

Met

AUG

1.00

1.00

1.00

1.00

1.00

1.00

1.00

Asn

AAC

0.46

0.50

0.45

0.56

0.44

0.47

0.56

Asn

AAU

1.54

1.50

1.55

1.44

1.56

1.54

1.44

Pro

CCA

1.21

1.26

1.22

1.21

1.20

1.219

1.23

Pro

CCC

0.84

0.82

0.78

0.84

0.77

0.761

0.84

Pro

CCU

1.49

1.44

1.50

1.39

1.55

1.503

1.41

Pro

CCG

0.46

0.48

0.50

0.57

0.47

0.517

0.53

Gln

CAA

1.54

1.48

1.54

1.50

1.56

1.558

1.51

Gln

CAG

0.46

0.52

0.46

0.50

0.44

0.442

0.49

Arg

AGA

1.44

1.43

1.45

1.35

1.44

1.398

1.38

Arg

AGG

0.56

0.57

0.55

0.65

0.56

0.602

0.62

Arg

CGA

1.60

1.60

1.63

1.62

1.63

1.599

1.68

Arg

CGC

0.43

0.46

0.41

0.41

0.41

0.485

0.42

Arg

CGG

0.50

0.58

0.47

0.70

0.49

0.606

0.67

Arg

CGU

1.47

1.36

1.49

1.27

1.47

1.31

1.23

Ser

AGC

0.54

0.54

0.50

0.67

0.53

0.664

0.69

Ser

AGU

1.46

1.46

1.50

1.33

1.47

1.336

1.31

Ser

UCA

0.91

1.18

0.94

1.23

0.95

0.978

1.24

Ser

UCC

0.99

0.83

0.96

0.80

0.94

0.931

0.80

Ser

UCG

0.54

0.52

0.52

0.59

0.53

0.596

0.61

Ser

UCU

1.56

1.48

1.58

1.37

1.59

1.495

1.35

Thr

ACC

0.82

0.77

0.81

0.91

0.82

0.869

0.89

Thr

ACA

1.16

1.23

1.17

1.20

1.18

1.122

1.23

Thr

ACG

0.49

0.45

0.47

0.54

0.48

0.539

0.54

Thr

ACU

1.53

1.56

1.55

1.35

1.52

1.469

1.33

Val

GUU

1.49

1.39

1.48

1.53

1.48

1.488

1.54

Val

GUG

0.50

0.57

0.53

0.51

0.53

0.549

0.50

Val

GUC

0.55

0.53

0.53

0.62

0.57

0.593

0.60

Val

GUA

1.45

1.51

1.46

1.34

1.42

1.37

1.36

Trp

UGG

1.00

1.00

1.00

1.00

1.00

1

1.00

Tyr

UAC

0.43

0.46

0.43

0.54

0.44

0.483

0.52

Tyr

UAU

1.57

1.54

1.57

1.46

1.56

1.517

1.48

Stopb

UGA

0.88

1.21

0.88

1.17

0.89

1.122

1.21

Stopb

UAG

0.80

0.76

0.80

0.71

0.81

0.653

0.74

Stopb

UAA

1.32

1.03

1.32

1.12

1.30

1.225

1.045

  1. aRelative synonymous codon usage; bStop codon