Table 1 Selected DEGs involved in hormone signal pathway

evm.TU.supercontig_62.11

− 5.61

− 4.60

Ethylene-responsive transcription factor (ERF109)

Arabidopsis thaliana

evm.TU.supercontig_2304.1

−3.17

1.03

Ethylene-responsive transcription factor (ERF)

Arabidopsis thaliana

evm.TU.supercontig_224.4

−2.90

− 1.17

AP2-like ethylene-responsive transcription factor (ERF)

Arabidopsis thaliana

evm.TU.supercontig_151.32

2.06

−0.26

Ethylene response sensor 1 (ERS1)

Arabidopsis thaliana

evm.TU.supercontig_152.58

2.25

1.86

1-aminocyclopropane-1-carboxylate oxidase 1 (ACO1)

Petunia hybrida

evm.TU.supercontig_34.132

2.60

2.21

Ethylene-responsive transcription factor (ERF053)

Arabidopsis thaliana

evm.TU.supercontig_128.50

2.78

2.18

Serine/threonine-protein kinase (CTR1)

Arabidopsis thaliana

evm.TU.supercontig_199.10

3.41

2.43

AP2-like ethylene-responsive transcription factor(ERF)

Arabidopsis thaliana

evm.TU.supercontig_49.94

4.68

2.23

Ethylene-responsive transcription factor (ERF110)

Arabidopsis thaliana

evm.TU.supercontig_54.28

5.90

9.33

Ethylene-responsive transcription factor WRI1(ERF-WRI1)

Arabidopsis thaliana

evm.TU.supercontig_26.24

−4.54

−3.50

Auxin response factor 5 (ARF5)

Arabidopsis thaliana

evm.TU.supercontig_3603.1

−4.16

−2.15

Auxin transport protein BIG (BIG)

Arabidopsis thaliana

evm.TU.contig_35483

−4.13

−0.56

Auxin efflux carrier component 1 (PIN1)

Arabidopsis thaliana

evm.TU.contig_44255

−3.63

0.06

Auxin efflux carrier component 1 (PIN1)

Arabidopsis thaliana

evm.TU.supercontig_87.29

−2.59

0.40

Auxin-responsive protein IAA11(IAA11)

Arabidopsis thaliana

evm.TU.supercontig_327.9

−2.39

−1.52

Auxin-repressed 12.5 kDa protein

Fragaria ananassa (Strawberry)

C.papaya_newGene_850

−2.23

−1.76

Auxin transport protein BIG (BIG)

Arabidopsis thaliana

evm.TU.supercontig_34.122

1.97

−2.16

Probable indole-3-acetic acid-amido synthetase (GH3.5)

Oryza sativa subsp. japonica (Rice)

evm.TU.supercontig_6.357

2.06

1.16

Auxin efflux carrier family protein isoform 1

Theobroma cacao

evm.TU.supercontig_395.4

2.06

0.86

Cytochrome b561 and DOMON domain-containing protein

Arabidopsis thaliana

evm.TU.contig_31756

2.12

1.05

Auxin response factor 2 (ARF2)

Arabidopsis thaliana

evm.TU.supercontig_37.56

2.35

0.14

Auxin-induced protein X10A

Glycine max (Soybean)

evm.TU.contig_38023

2.71

2.08

Auxin response factor 2 GN = MTG10.3 (ARF2)

Arabidopsis thaliana (Mouse-ear cress)

evm.TU.supercontig_9.240

3.32

1.84

Auxin-regulated gene involved in organ size

Theobroma cacao

evm.TU.supercontig_34.167

3.68

1.93

Auxin-induced protein 6B

Glycine max (Soybean)

evm.TU.supercontig_23.159

4.23

1.27

Auxin-induced protein 22B AUX22B

Vigna radiata var. radiata (Mung bean)

evm.TU.supercontig_292.1

4.30

3.60

Probable indole-3-acetic acid-amido synthetase (GH3.1)

Arabidopsis thaliana

evm.TU.supercontig_150.1

4.37

3.87

Indole-3-acetic acid-induced protein ARG7

Vigna radiata var. radiata (Mung bean)

evm.TU.supercontig_26.221

5.52

–

Indole-3-acetic acid-induced protein ARG7

Vigna radiata var. radiata (Mung bean)

evm.TU.supercontig_37.221

5.78

–

Auxin-induced protein X10A

Glycine max (Soybean)

gevm.TU.contig_24967.2

8.11

4.92

Auxin efflux carrier family protein, putative

Theobroma cacao

evm.TU.supercontig_3.174

–

7.43

WAT1-related protein

Arabidopsis thaliana

evm.TU.supercontig_19.124

1.15

2.04

Abscisic acid receptor PYL4

Arabidopsis thaliana

evm.TU.contig_36665

2.12

0.85

Abscisic acid receptor PYR1

Arabidopsis thaliana

evm.TU.supercontig_3.59

–

2.76

Abscisic acid receptor PYL8

Arabidopsis thaliana

evm.TU.supercontig_26.40

−2.73

−3.34

Gibberellin regulated protein

evm.TU.supercontig_66.47

−2.11

−4.76

Gibberellin-regulated protein 3 (GASA3)

Arabidopsis thaliana

evm.TU.supercontig_166.2

−1.88

−5.25

Gibberellin 2-beta-dioxygenase (GA2OX1)

Phaseolus coccineus (Scarlet runner bean)

evm.TU.supercontig_18.158

1.69

2.88

Gibberellin receptor GID1, putative

Theobroma cacao

evm.TU.supercontig_3097.1

2.58

2.01

GRAS domain family

evm.TU.supercontig_77.94

5.12

2.22

Gibberellin 2-beta-dioxygenase 1

Pisum sativum (Garden pea)