Table 1 Summary of protein identification with AB SCIEX Triple TOF 5600 platform using Paragon Algorithm with ProteinPilot v5.0.1
Unused (Conf) Cutoff | Proteins Detected | Proteins Before Grouping | Distinct Peptides | Spectra Identified | % Total Spectra |
|---|---|---|---|---|---|
> 2.0 (99) | 3387 | 14816 | 66842 | 1193777 | 68.8 |
> 1.3 (95) | 3855 | 17469 | 68548 | 1205044 | 69.5 |
> 0.47 (66) | 4649 | 21946 | 71945 | 1217799 | 70.2 |
Cutoff Applied: > 0.05 (10%) | 8979 | 59421 | 87507 | 1256111 | 72.4 |