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Fig. 2 | BMC Plant Biology

Fig. 2

From: Genome-wide identification and characterization of long non-coding RNAs involved in fruit ripening and the climacteric in Cucumis melo

Fig. 2

Characterization of candidate lncRNAs and statistical analysis of differentially expressed lncRNAs. a Venn diagram of candidate lncRNAs. The coding potential of transcripts was predicted using the CPC tool and the Pfam database. 3857 was the number of lncRNAs that included in CPC but not included in Pfam, 819 was only in CPC, 1005 wasn’t in Pfam or CPC. b Classification of the identified lncRNAs; 85.7% of the total lncRNAs were intergenic lncRNAs and 14.3% were anti-sense lncRNAs. c Venn diagram of differentially expressed lncRNAs; 528, 510, 76, and 997 differentially expressed lncRNAs were identified among the G-vs-R, R-vs-C, C-vs-P, and G-vs-C stage libraries, respectively. In total, 41 differentially expressed lncRNAs were detected at the four groups. d Length distribution of the transcripts. The horizontal axis from left to right indicate the length (left), number of exons (middle), and open reading frame length (right) of the transcripts. The vertical axis represents the density of the transcripts

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