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Table 1 Identification of putative F3’H genes in cereal plants. The F3’H class was classified based on the phylogeny analyses. The gene duplication pattern was determined using the MCScanX tool. NA stands for “not applicable”

From: Evolutionary dynamic analyses on monocot flavonoid 3′-hydroxylase gene family reveal evidence of plant-environment interaction

Species

Chr

F3’H gene ID

F3’H class

Duplication pattern

Start position

End position

Triticeae

H. vulgare

1H

HORVU1Hr1G094880

Class I

Dispersed duplication

556,691,949

556,693,904

6H

HORVU6Hr1G002400

Class II

Dispersed duplication

6,328,532

6,330,799

7H

HORVU7Hr1G095900.47

Class II

Dispersed duplication

585,061,615

585,071,468

A. tauschiii

Aet1

AET1Gv21041800

Class I

Dispersed duplication

499,122,364

499,126,756

Aet6

AET6Gv20027200

Class II

Dispersed duplication

5,657,246

5,659,238

Aet7

AET7Gv20999800

Class II

Dispersed duplication

523,485,446

523,487,617

T. turgidum

Tt1A

TRIDC1AG064860

Class I

NA

590,437,663

590,440,408

Tt1B

TRIDC1BG074020

Class I

685,939,174

685,944,027

Tt2B

TRIDC2BG088640

Class I

792,785,227

792,787,184

Tt6A

TRIDC6AG001340

Class II

4,624,395

4,644,086

Tt6B

TRIDC6BG002010

Class II

11,399,578

11,402,254

Tt7A

TRIDC7AG057400

Class II

599,327,799

599,328,465

Tt7B

TRIDC7BG049820

Class II

562,791,603

562,792,604

T. aestivum

Ta1A

TraesCS1A01G442300.1

Class I

NA

590,995,642

590,997,413

Ta1B

TraesCS1B01G476400.1

Class I

685,231,562

685,233,491

Ta1D

TraesCS1D01G450100.1

Class I

492,534,241

492,538,011

Ta2B

TraesCS2B01G613200.1

Class I

792,677,476

792,679,409

Ta6A

TraesCS6A01G012600.1

Class II

5,861,572

5,863,417

Ta6B

TraesCS6B01G018800.1

Class I

11,574,703

11,578,097

Ta6D

TraesCS6D01G015200.1

Class II

6,319,419

6,321,226

Ta7A

TraesCS7A01G411700.1

Class II

602,804,667

602,806,415

Ta7D

TraesCS7D01G404900.1

Class II

522,502,518

522,504,208

S. cereale

Sc1

Sc1Loc01465431

Class I

NA

Lo7_v2_contig_2871825

Sc2

Sc2Loc01684522

Class I

Lo7_v2_contig_326626

Sc7

Sc7Loc01952123

Class II

Lo7_v2_contig_61986

T. urartu

Tu1

TuG1812G0100004862

Class I

Dispersed duplication

581,402,997

581,404,997

Tu7

TuG1812G0700004460

Class II

Dispersed duplication

590,301,744

590,303,739

 

B. distachyon

Bd1

Bradi1g17180

Class I

Dispersed duplication

13,787,434

13,789,806

Bd1

Bradi1g24840

Class II

Dispersed duplication

20,108,563

20,112,348

Bd3

Bradi3g04750

Class I

Dispersed duplication

3,260,666

3,262,706

Bd4

Bradi4g16560

Class II

Dispersed duplication

17,368,956

17,372,786

 

O. sativa indica

Os10

LOC_Os10g17260

Class I

Proximal duplication

8,679,309

8,681,284

Os10

LOC_Os10g16974

Class II

Proximal duplication

8,494,247

8,504,329

Panicoideae

Z. mays

Zm4

Zm00008a016611

Class I

WGD/Segmental

131,908,959

131,910,431

Zm5

Zm00008a022212

Class I

WGD/Segmental

177,289,973

177,292,210

Zm8

Zm00008a031477

Class II

Dispersed duplication

116,235,840

116,239,418

S. bicolor

Sb4

Sobic.004G200800

Class I

Tandem duplication

55,221,098

55,224,686

Sb4

Sobic.004G200833

Class I

Tandem duplication

55,225,513

55,227,179

Sb4

Sobic.004G200900

Class I

Proximal duplication

55,233,582

55,236,702

Sb4

Sobic.004G201100

Class I

Proximal duplication

55,261,682

55,264,545

Sb9

Sobic.009G162500

Class II

Dispersed duplication

51,943,204

51,948,939

S. italica

Si9

Seita.9G244600

Class II

Dispersed duplication

19,091,837

19,094,929

Si9

Seita.9G242900

Class I

Dispersed duplication

18,990,913

18,992,801

P. hallii

Ph8

Pahal.H01052

Class II

Dispersed duplication

31,682,928

31,687,178

Ph9

Pahal.I03232

Class I

Dispersed duplication

16,748,267

16,750,212