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Table 5 List of DEGs related to salt stress response identified in G2-S4 vs G2-CK comparison

From: RNASeq analysis of giant cane reveals the leaf transcriptome dynamics under long-term salt stress

Cluster ID

Database description

Identity score

Identity E value

log2 fold change

Salt sensory and signaling mechanisms

 14027.85357

Setaria italica CBL-interacting protein kinase 1 (CIPK1-SOS2-like)

(Nt ID: XM_004967556.3)

92.31%

8e-73

Infa

 14027.198243

Oryza sativa subsp. japonica CBL-interacting protein kinase 24 (SOS2)

(Swissprot ID: Q69Q47)

87.88%

8e-126

+ 11.098

 14027.54233

Setaria italica probable cation transporter HKT9

(Nr ID: XP_004967240.1)

86.32%

1e-132

+ 35.667

 14027.155893

Arabidopsis thaliana Sodium/hydrogen exchanger 1 (NHX1)

(Swissprot ID: Q68KI4)

68.46%

6e-177

+ 14.324

Transcription factors

 14027.159287

Setaria italica trihelix transcription factor GTL1, (Nt ID: XM_012842882.1)

81.72%

6e-45

+ 29.044

 14027.82197

Setaria italica bZIP ABSCISIC ACID-INSENSITIVE 5-like protein 7

(Swissprot ID: Q9M7Q2)

79.96%

9e-82

+ 17.106

Hormone regulation of salt stress response

 14027.234361

Setaria italica abscisic acid 8′-hydroxylase 3

(Nr ID: XP_004957014.1)

83.43%

0.0

+ 41.107

 14027.144393

Setaria italica abscisic acid receptor PYL8

(Nt ID: XM_004951229.2)

77.85%

4e-80

+ 12.599

 14027.36786

Setaria italica brassinosteroid-6-oxidase 2 cytochrome P450 85A1

(KO ID: K12640)

93.36%

4e-141

+ 19.415

 14027.99735

Oryza brachyantha 1-amino cyclopropane-1-carboxylate oxidase (ACC oxidase)

(Nt ID: XM_006647913.2)

72.38%

2e-149

+ 22.325

 14027.89434

Oryza sativa Japonica Group ethylene receptor-like protein 1 (ETR1)

(Nr ID: AAL29304.2)

51.05%

3e-48

− 18.141

 14027.182197

Arabidopsis thaliana serine/threonine-protein kinase CTR1, (Swissprot ID: Q05609)

87.50%

3e-145

+ 11.918

 14027.226694

Setaria italica ETHYLENE INSENSITIVE 3-like 3 protein (EIN3)

(Nr ID: XP_004973869.1)

61.43%

1e-113

+ 14.849

 14027.190058

Zea mays Indole-3-acetaldehyde oxidase (AAO)

(Swissprot ID: O23887)

67.55%

4e-175

+ 13.436

 14027.58358

Setaria italica probable indole-3-acetic acid-amido synthetase GH3.8

(Nr ID: XP_004958192.1)

69.87%

2e-133

Infa

 14027.189947

Oryza sativa subsp. japonica Jasmonic acid-amido synthetase JAR1

(Swissprot ID: Q6I581)

60.65%

2e-167

− 28.213

ROS scavenging regulatory mechanisms

 14027.42850

Flaveria pringlei NADP-dependent malic enzyme, chloroplastic

(Swissprot ID: P36444)

55.29%

6e-111

Infa

 14027.184286

Setaria italica ubiquinol oxidase 2, mitochondrial-like (AOX)

(Nr ID: XP_004976683.1)

93.02%

1e-64

+ 20.525

 14027.154629

Setaria italica superoxide dismutase [Cu-Zn]

(Nt ID: XM_004958551.3)

89.43%

2e-74

+ 36.275

 14027.237926

Setaria italica superoxide dismutase [Fe] 2, chloroplastic-like

(Nt ID: XM_004964461.2)

98.26%

2e-68

− 11.661

Osmolyte biosynthesis

 14027.146844

Setaria italica delta-1-pyrroline-5-carboxylate synthase (P5CS)

(Nt ID: XM_004961829.3)

91.92%

6e-168

+ 68.438

 14027.197137

Brachypodium distachyon delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial (P5CSDH)

(Nr ID: XP_010231104.1)

92.46%

5e-138

+ 17.285

 14027.163909

Oryza sativa subsp. indica Betaine aldehyde dehydrogenase (BADH)

(Swissprot ID: B3VMC0)

92.96%

1e-41

+ 15.021

 5159.0

Zea mays ornithine decarboxylase-like (ODC)

(Nr ID: XP_008653000.1)

52.96%

1e-112

+ 51.866

 14027.196396

Oryza sativa Japonica Group Arginine decarboxylase 1 (ADC)

(Nr ID: XP_015643038.1)

92.73%

1e-142

+ 65.072

 14027.211822

Setaria italica spermine synthase-like (SPMS)

(Nr ID: XP_004951294.1)

89.78%

2e-175

+ 10.003

Photosynthesis and photorespiration

 14027.158740

Oryza sativa, subsp. japonica Group Ribulose bisphosphate carboxylase small chain A

(Swissprot ID: P18566)

88.96%

3e-100

− 24.091

 14027.70509

Arundo donax ribulose-bisphosphate carboxylase large subunit (rbcL)

(Nt ID: KJ880079.1)

100.00%

1e-104

− 17.789

 14027.158959

Setaria italica ruBisCO large subunit-binding protein subunit beta

(Nr ID: XP_004975721.1)

95.45%

2e-19

− 14.938

 14027.168331

Setaria italica ribulose bisphosphate carboxylase/oxygenase activase

(Nt ID: XM_004960085.2)

84.71%

1e-46

− 15.647

 14027.198015

Oryza brachyantha phosphoenolpyruvate carboxylase (PEPC) (Nr ID: XP_006644735)

93,85%

1e-174

+ 11.496

 14027.153211

Oryza sativa chloroplastic pyruvate phosphate dikinase 1 (PPDK1)

(Swissprot ID: Q6AVA8)

88.41%

1e-163

+ 29.711

 14027.158029

Setaria italica phosphoenolpyruvate carboxylase kinase (PEPC kinase)

(Nr ID: XP_004976235.1)

84.05%

2e-127

− 40.627

Biomass digestibility and biofuel production

 14027.150588

Setaria italica putative cinnamyl alcohol dehydrogenase

(Nt ID: XM_004972526.2)

79.53%

6e-116

+ 14.463

  1. ait means that the read count value of CK samples is zero