From: RNASeq analysis of giant cane reveals the leaf transcriptome dynamics under long-term salt stress
Cluster ID | Database description | Identity score | Identity E value | log2 fold change |
---|---|---|---|---|
Salt sensory and signaling mechanisms | ||||
14027.85357 | Setaria italica CBL-interacting protein kinase 1 (CIPK1-SOS2-like) (Nt ID: XM_004967556.3) | 92.31% | 8e-73 | Infa |
14027.198243 | Oryza sativa subsp. japonica CBL-interacting protein kinase 24 (SOS2) (Swissprot ID: Q69Q47) | 87.88% | 8e-126 | + 11.098 |
14027.54233 | Setaria italica probable cation transporter HKT9 (Nr ID: XP_004967240.1) | 86.32% | 1e-132 | + 35.667 |
14027.155893 | Arabidopsis thaliana Sodium/hydrogen exchanger 1 (NHX1) (Swissprot ID: Q68KI4) | 68.46% | 6e-177 | + 14.324 |
Transcription factors | ||||
14027.159287 | Setaria italica trihelix transcription factor GTL1, (Nt ID: XM_012842882.1) | 81.72% | 6e-45 | + 29.044 |
14027.82197 | Setaria italica bZIP ABSCISIC ACID-INSENSITIVE 5-like protein 7 (Swissprot ID: Q9M7Q2) | 79.96% | 9e-82 | + 17.106 |
Hormone regulation of salt stress response | ||||
14027.234361 | Setaria italica abscisic acid 8′-hydroxylase 3 (Nr ID: XP_004957014.1) | 83.43% | 0.0 | + 41.107 |
14027.144393 | Setaria italica abscisic acid receptor PYL8 (Nt ID: XM_004951229.2) | 77.85% | 4e-80 | + 12.599 |
14027.36786 | Setaria italica brassinosteroid-6-oxidase 2 cytochrome P450 85A1 (KO ID: K12640) | 93.36% | 4e-141 | + 19.415 |
14027.99735 | Oryza brachyantha 1-amino cyclopropane-1-carboxylate oxidase (ACC oxidase) (Nt ID: XM_006647913.2) | 72.38% | 2e-149 | + 22.325 |
14027.89434 | Oryza sativa Japonica Group ethylene receptor-like protein 1 (ETR1) (Nr ID: AAL29304.2) | 51.05% | 3e-48 | − 18.141 |
14027.182197 | Arabidopsis thaliana serine/threonine-protein kinase CTR1, (Swissprot ID: Q05609) | 87.50% | 3e-145 | + 11.918 |
14027.226694 | Setaria italica ETHYLENE INSENSITIVE 3-like 3 protein (EIN3) (Nr ID: XP_004973869.1) | 61.43% | 1e-113 | + 14.849 |
14027.190058 | Zea mays Indole-3-acetaldehyde oxidase (AAO) (Swissprot ID: O23887) | 67.55% | 4e-175 | + 13.436 |
14027.58358 | Setaria italica probable indole-3-acetic acid-amido synthetase GH3.8 (Nr ID: XP_004958192.1) | 69.87% | 2e-133 | Infa |
14027.189947 | Oryza sativa subsp. japonica Jasmonic acid-amido synthetase JAR1 (Swissprot ID: Q6I581) | 60.65% | 2e-167 | − 28.213 |
ROS scavenging regulatory mechanisms | ||||
14027.42850 | Flaveria pringlei NADP-dependent malic enzyme, chloroplastic (Swissprot ID: P36444) | 55.29% | 6e-111 | Infa |
14027.184286 | Setaria italica ubiquinol oxidase 2, mitochondrial-like (AOX) (Nr ID: XP_004976683.1) | 93.02% | 1e-64 | + 20.525 |
14027.154629 | Setaria italica superoxide dismutase [Cu-Zn] (Nt ID: XM_004958551.3) | 89.43% | 2e-74 | + 36.275 |
14027.237926 | Setaria italica superoxide dismutase [Fe] 2, chloroplastic-like (Nt ID: XM_004964461.2) | 98.26% | 2e-68 | − 11.661 |
Osmolyte biosynthesis | ||||
14027.146844 | Setaria italica delta-1-pyrroline-5-carboxylate synthase (P5CS) (Nt ID: XM_004961829.3) | 91.92% | 6e-168 | + 68.438 |
14027.197137 | Brachypodium distachyon delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial (P5CSDH) (Nr ID: XP_010231104.1) | 92.46% | 5e-138 | + 17.285 |
14027.163909 | Oryza sativa subsp. indica Betaine aldehyde dehydrogenase (BADH) (Swissprot ID: B3VMC0) | 92.96% | 1e-41 | + 15.021 |
5159.0 | Zea mays ornithine decarboxylase-like (ODC) (Nr ID: XP_008653000.1) | 52.96% | 1e-112 | + 51.866 |
14027.196396 | Oryza sativa Japonica Group Arginine decarboxylase 1 (ADC) (Nr ID: XP_015643038.1) | 92.73% | 1e-142 | + 65.072 |
14027.211822 | Setaria italica spermine synthase-like (SPMS) (Nr ID: XP_004951294.1) | 89.78% | 2e-175 | + 10.003 |
Photosynthesis and photorespiration | ||||
14027.158740 | Oryza sativa, subsp. japonica Group Ribulose bisphosphate carboxylase small chain A (Swissprot ID: P18566) | 88.96% | 3e-100 | − 24.091 |
14027.70509 | Arundo donax ribulose-bisphosphate carboxylase large subunit (rbcL) (Nt ID: KJ880079.1) | 100.00% | 1e-104 | − 17.789 |
14027.158959 | Setaria italica ruBisCO large subunit-binding protein subunit beta (Nr ID: XP_004975721.1) | 95.45% | 2e-19 | − 14.938 |
14027.168331 | Setaria italica ribulose bisphosphate carboxylase/oxygenase activase (Nt ID: XM_004960085.2) | 84.71% | 1e-46 | − 15.647 |
14027.198015 | Oryza brachyantha phosphoenolpyruvate carboxylase (PEPC) (Nr ID: XP_006644735) | 93,85% | 1e-174 | + 11.496 |
14027.153211 | Oryza sativa chloroplastic pyruvate phosphate dikinase 1 (PPDK1) (Swissprot ID: Q6AVA8) | 88.41% | 1e-163 | + 29.711 |
14027.158029 | Setaria italica phosphoenolpyruvate carboxylase kinase (PEPC kinase) (Nr ID: XP_004976235.1) | 84.05% | 2e-127 | − 40.627 |
Biomass digestibility and biofuel production | ||||
14027.150588 | Setaria italica putative cinnamyl alcohol dehydrogenase (Nt ID: XM_004972526.2) | 79.53% | 6e-116 | + 14.463 |