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Table 3 Significant genomic regions and most significant SNP in each region identified by bulk segregant analysis (BSA)

From: Single-plant GWAS coupled with bulk segregant analysis allows rapid identification and corroboration of plant-height candidate SNPs

Chr

Left Position

Right Position

Length (kb)

Most significant SNP (within the region)

P-value of most significant SNP

1

3,882,962

5,339,260

1456.3

5,330,693

5.47E-04

1

60,757,940

62,234,211

1476.3

60,808,467

2.54E-03

1

208,068,095

208,216,068

148.0

208,145,209

1.67E-03

1

230,758,325

230,895,709

137.4

230,796,501

3.04E-03

1

238,020,521

238,027,732

7.2

238,024,306

5.99E-06

1

258,497,186

258,507,663

10.5

258,502,438

3.89E-03

1

267,066,207

267,228,747

162.5

267,219,432

1.82E-03

1

293,218,485

299,645,056

6426.6

299,541,586

8.15E-05

2

2,130,342

2,227,154

96.8

2,208,251

1.61E-03

2a

17,397,531

33,383,795

15,986.3

27,507,105

1.10E-07

2

41,034,083

41,067,877

33.8

41,038,235

1.57E-03

2

217,455,023

217,555,483

100.5

217,491,376

3.01E-03

3a

2,679,766

12,559,796

9880.0

6,936,331

7.33E-04

3

139,209,369

139,253,807

44.4

139,252,674

6.97E-04

3

146,347,706

154,225,475

7877.8

146,397,740

3.02E-04

3

223,622,887

229,075,692

5452.8

225,291,181

4.88E-05

4

26,431,986

26,532,076

100.1

26,434,686

1.79E-05

4

31,498,513

32,679,484

1181.0

31,546,290

2.97E-04

4

76,411,353

76,423,428

12.1

76,411,660

1.34E-03

4a

188,388,447

216,889,443

28,501.0

198,947,559

3.78E-10

4

229,854,776

239,419,902

9565.1

235,360,468

1.20E-05

5

3,996,779

4,035,497

38.7

39,912,899

7.54E-04

5

31,366,406

34,883,247

3516.8

34,774,969

6.08E-06

5

39,796,417

39,929,581

133.2

39,912,899

7.55E-04

5

49,927,102

58,754,489

8827.4

56,940,744

1.98E-05

6

39,702,906

39,826,253

123.3

39,724,316

1.62E-03

6

63,924,853

68,656,185

4731.3

68,361,841

4.57E-04

6

74,549,141

74,625,826

76.7

74,625,635

5.00E-04

6

117,970,384

124,481,894

6511.5

118,935,475

2.39E-04

6

135,039,689

135,267,591

227.9

135,110,742

3.49E-03

6

147,215,787

151,134,287

3918.5

151,039,462

3.86E-04

6

158,676,084

166,187,944

7511.9

164,751,856

2.96E-04

7

130,739,179

130,913,149

174.0

130,910,813

7.33E-04

7

159,797,611

159,817,662

20.1

159,809,085

4.05E-03

8

121,946,436

121,954,911

8.5

121,951,520

3.46E-03

9

144,576,519

153,778,981

9202.5

152,798,129

8.53E-07

10

108,394,057

108,436,541

42.5

108,399,093

1.08E-03

  1. aSNPs/regions that overlap between sp-GWAS and BSA