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Table 5 Location, significance and confidence interval of QTL identified by MQM in ‘Tanabe 54’ x ‘Tosashimizu 63’ F1 population for PWD resistance

From: Construction of genetic linkage map and identification of a novel major locus for resistance to pine wood nematode in Japanese black pine (Pinus thunbergii)

Tanabe 54′ linkage map Integrated map
LGa LOD threshold-GWb LOD threshold-LG specific Max LOD % Varc Nearest marker QTL confidence interval (cM) LOD threshold-GWb LOD threshold-LG specific Max LOD % Varc Nearest marker QTL confidence interval (cM)
03 2.6 1.6 4.27 9.9 GG_BPCS14F07_283 38.7–45.8 4.3 2.9 5.51 12.6 GG_BPCS14F07_283 41.8–50.8
  1. a Linkage group
  2. b Genome-wide
  3. c Percentage phenotypic variance explained