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Table 2 Expression level of key enzymes in lignin biosynthesis pathway of ‘Dangshan Su’ pear

From: Transcriptomic analysis of early fruit development in Chinese white pear (Pyrus bretschneideri Rehd.) and functional identification of PbCCR1 in lignin biosynthesis

Gene name

Genome ID

0 DPA VS 7 DPA TPM

7 DPA VS 15 DPA TPM

0 DPA VS 15 DPA TPM

0 DPA

7 DPA

DEGs

7 DPA

15 DPA

DEGs

0 DPA

15 DPA

DEGs

PbPAL1

Pbr008363.1

55.552

156.094

UP

156.094

275.613

UP

55.552

275.613

UP

PbPAL2

Pbr008387.1

0.0001

0.0001

*

0.0001

0.0001

*

0.0001

0.0001

*

PbPAL3

Pbr016460.1

27.557

53.181

*

53.181

108.033

UP

27.557

108.033

UP

PbC4H1

Pbr017290.1

300.966

259.520

*

259.520

1299.55

UP

300.966

1299.55

UP

PbC4H2

Pbr013141.1

406.084

370.695

*

370.695

360.987

*

406.084

360.987

*

PbC4H3

Pbr013138.1

35.905

37.884

*

37.884

5.084

DOWN

35.905

5.084

DOWN

PbC3H

Pbr020891.1

0.164

0.0001

*

0.0001

6.129

UP

0.164

6.129

UP

Pb4CL1

Pbr024635.1

3.706

8.496

UP

8.496

82.318

UP

3.706

82.318

UP

Pb4CL2

Pbr012851.1

34.962

158.292

UP

158.292

391.148

UP

34.962

391.148

UP

PbCCoAOMT

Pbr034039.1

6.174

19.613

*

19.613

389.731

UP

6.174

389.731

UP

PbHCT2

Pbr005360.1

17.081

8.925

*

8.925

34.744

UP

17.081

34.744

UP

PbHCT17

Pbr006709.1

1.926

109.163

UP

109.163

181.963

*

1.926

181.963

UP

PbHCT18

Pbr006711.1

0.0001

0.638

*

0.638

2.037

*

0.0001

2.037

*

PbHCT49

Pbr022422.1

808.729

1403.77

*

1403.77

574.853

DOWN

808.729

574.853

*

PbHCT50

Pbr022425.1

13.861

66.308

UP

66.308

210.283

UP

13.861

210.283

UP

PbF5H1

Pbr040547.1

0.381

0.842

*

0.842

31.635

UP

0.381

31.635

UP

PbF5H2

Pbr022142.1

1.748

4.611

*

4.611

103.477

UP

1.748

103.477

UP

PbCCR1

Pbr022402.1

14.366

34.882

UP

34.882

141.894

UP

14.366

141.894

UP

PbCCR2

Pbr022405.1

35.409

76.935

UP

76.935

165.976

UP

35.409

165.976

UP

PbCCR3

Pbr022403.1

0.157

0.338

*

0.338

0.719

*

0.157

0.719

*

PbCOMT1

Pbr034039.1

6.174

19.613

UP

19.613

389.731

UP

6.174

389.731

UP

PbCOMT3

Pbr038709.1

30.472

77.014

UP

77.014

483.801

UP

30.472

483.801

UP

PbCAD1

Pbr040236.1

0.237

0.108

*

0.108

0.0001

*

0.237

0.0001

*

PbCAD2

Pbr026287.1

7.771

10.568

*

10.568

29.151

UP

7.771

29.151

UP

PbCAD3

Pbr026289.1

2.318

12.256

UP

12.256

1.487

DOWN

2.318

1.487

*

PbLAC1

Pbr003857.1

0.097

3.876

*

3.876

197.086

UP

0.097

197.086

UP

PbLAC14

Pbr018935.1

0.051

0.018

*

0.018

1.384

*

0.051

1.384

*

PbPOD1

Pbr035186.1

485.635

299.328

*

299.328

398.483

*

485.635

398.483

*

PbPOD2

Pbr031894.1

270.852

1455.64

UP

1455.64

2402.79

*

270.852

2402.79

UP

PbPOD3

Pbr034480.1

0.643

3.399

*

3.399

3.586

*

0.643

3.586

*

PbSAD

Pbr004675.1

0.0001

0.399

*

0.399

2.777

*

0.0001

2.777

*

PbUGT1

Pbr005011.1

0.278

0.0001

*

0.0001

0.0001

*

0.278

0.0001

*

PbUGT2

Pbr005013.1

0.0001

0.0001

*

0.0001

0.0001

*

0.0001

0.0001

*

PbUGT3

Pbr005014.1

2.889

5.195

*

5.195

2.077

DOWN

2.889

2.077

*

  1. *Indicates that the gene is not differentially expressed gene