Skip to main content

Table 1 Identification of up-regulated DEGs at initial (May) and rapid (July) thickening stages of P. notoginseng taproots

From: Comparative transcriptome and metabolome analyses provide new insights into the molecular mechanisms underlying taproot thickening in Panax notoginseng

ID

Description

TAIR ID

RPKM

Mar

May

Jul

Nov

Carbohydrate and storage metabolism

 Unigene0007855

RNase-like major storage protein

AT2G02990

22.3

3071.0

129,797.0

44,296.7

 Unigene0036675

RNase-like major storage protein

AT2G02990

25.6

5736.2

140,415.0

48,725.4

 Unigene0001769

Beta-amylase 5

AT4G15210

55.9

3345.0

11,618.7

4698.6

 Unigene0035964

Alpha-1,4 glucan phosphorylase L isozyme

AT3G29320

8.4

302.2

728.3

570.6

 Unigene0011567

Starch branching enzyme I

AT2G36390

18.4

259.8

1087.5

850.9

 Unigene0036902

Vacuolar protein sorting-associated protein 32 homolog 2

AT4G29160

8.1

194.4

426.2

369.6

Signal transduction and transcription

 Unigene0032604

Protein phosphatase 2C 37-like

AT3G11410

11.9

19.1

53.7

77.2

 Unigene0014980

Two-component response regulator-like APRR7

AT5G53420

20.5

39.0

209.9

90.9

 Unigene0011239

DA1-related protein 5

AT5G62580

18.6

26.4

38.4

29.5

Secondary metabolism

 Unigene0034150

GBR5

/

208.3

357.5

810.6

601.6

 Unigene0036783

Heterodimeric geranylgeranyl pyrophosphate synthase small subunit

AT4G38460

23.6

232.5

1157.4

282.1

Undefined

 Unigene0002182

Aspartate, glycine, lysine and serine-rich protein

AT5G20190

29.0

118.0

207.9

403.3