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Table 1 Genes annotated for developmental processes, reproduction and/or embryo development between female, male and hermaphrodite flower buds (size 1 to 6 mm)

From: Differential gene expression among three sex types reveals a MALE STERILITY 1 (CpMS1) for sex differentiation in papaya

Gene ID

Description

LogCPM

Male vs. Female

Male vs. Hermaphrodite

Hermaphrodite vs. Female

FC*

FDR*

FC*

FDR*

FC*

FDR*

evm.model.supercontig_2.119

PHD Finger MALE STERILITY 1

5.87

2835.03

2.99E-02

294.20

1.01E-01

9.64

9.69E-01

evm.model.supercontig_157.32

Glucan endo-1,3-beta-glucosidase-like

5.20

30.13

4.50E-02

19.58

1.69E-01

1.54

9.79E-01

evm.model.supercontig_87.13

PHD Finger MALE MEIOCYTE DEATH 1

0.11

21.62

2.82E-02

1.32

1.00E+ 00

16.44

6.83E-02

evm.model.supercontig_85.48

Probable kinase

1.80

9.14

1.72E-02

1.92

1.00E+ 00

4.77

1.68E-01

evm.model.supercontig_50.85

Glycerol-3-phosphate acyltransferase 1

5.70

6.16

4.05E-02

4.31

2.07E-01

1.43

8.91E-01

evm.model.supercontig_1525.1

Abscisic acid 8-hydroxylase 1

5.22

5.32

1.34E-04

3.72

2.57E-03

1.43

3.48E-01

evm.model.supercontig_6.104

Steroid 22-alpha-hydroxylase/ cytochrome P450 90B1-like

3.97

4.73

2.98E-04

1.24

1.00E+ 00

3.81

3.18E-03

evm.model.supercontig_75.17

E3 ubiquitin-protein ligase XBAT32/33

4.14

3.49

1.02E-03

2.23

1.49E-01

1.56

5.40E-01

evm.model.supercontig_26.241

Cytochrome P450 83B1 (CYP83B1)

4.92

2.54

2.93E-02

1.12

1.00E+ 00

2.26

6.18E-02

evm.model.supercontig_427.3

Protein of unknown function (DUF642)

6.77

2.40

1.64E-04

−1.41

3.79E-01

3.38

2.66E-05

evm.model.supercontig_27.166

G-type lectin S-receptor-like serine threonine-kinase RKS1

4.48

2.09

4.30E-02

1.72

4.07E-01

1.21

8.95E-01

evm.model.supercontig_6.12

Pentatricopeptide repeat-containing protein chloroplastic

5.38

2.02

3.09E-03

1.57

1.58E-01

1.29

5.27E-01

evm.model.supercontig_26.316

Floral homeotic protein PISTILLATA

6.99

1.83

4.97E-03

−1.17

1.00E+ 00

2.14

1.44E-03

evm.model.supercontig_16.181

Condensin-2 complex subunit D3 (NCAPD3)

4.54

1.44

5.41E-01

−1.76

3.23E-01

2.53

5.09E-03

evm.model.supercontig_44.60

Transcription factor MYB4-like

1.68

1.16

9.91E-01

8.43

6.06E-02

−7.25

4.32E-02

evm.model.supercontig_59.35

Ammonium transporter 1 member 2

7.05

−1.42

1.95E-01

1.45

3.10E-01

−2.06

7.87E-04

evm.model.supercontig_13.86

Tetraspanin-11 related

2.43

−1.95

6.84E-01

−7.74

1.92E-02

3.96

1.02E-01

evm.model.supercontig_12.194

Scarecrow-like transcription factor PAT1

7.00

−2.09

2.49E-04

−1.62

8.51E-02

−1.29

4.66E-01

evm.model.supercontig_70.45

Potassium transporter 4

7.87

−2.10

2.55E-03

−1.21

1.00E+ 00

−1.73

1.72E-02

evm.model.supercontig_33.178

Calmodulin

9.88

−2.12

7.14E-04

−1.97

5.38E-03

−1.07

9.75E-01

evm.model.supercontig_8.181

Sterol 3-beta-glucosyltransferase UGT80A2

7.17

−2.14

6.60E-04

−1.50

2.37E-01

−1.43

1.93E-01

evm.model.supercontig_18.43

bZIP transcription factor 53

6.73

−2.15

1.32E-04

−1.54

1.42E-01

−1.40

2.19E-01

evm.model.supercontig_27.172

G-type lectin S-receptor-like serine threonine- kinase B120

4.56

−2.20

1.84E-02

−1.21

1.00E+ 00

− 1.82

1.27E-01

evm.model.supercontig_52.111

VAN3-binding/Auxin canalisation (Auxin canalis)

5.61

−2.22

5.19E-04

−1.64

6.37E-02

−1.35

2.98E-01

evm.model.supercontig_132.29

E3 ubiquitin- ligase COP1-like/ Protein suppressor of PHYA-105 1

4.30

−2.22

3.88E-02

1.09

1.00E+ 00

−2.43

2.14E-02

evm.model.supercontig_6.349

Thioredoxin reductase 2-like

5.96

−2.50

8.72E-05

−1.67

3.59E-02

−1.50

7.78E-02

evm.model.supercontig_18.81

Transcription factor UPBEAT1

2.86

−3.24

1.12E-01

−5.37

2.85E-02

1.66

7.36E-01

evm.model.supercontig_25.116

AP2-like ethylene-responsive transcription factor AIL1

2.96

−3.71

4.92E-02

−1.19

1.00E+ 00

− 3.11

1.24E-01

evm.model.supercontig_160.4

Receptor kinase HAIKU2

9.55

−3.71

9.38E-04

−1.95

1.01E-01

−1.90

5.32E-02

evm.model.supercontig_49.19

Abscisic acid 8 -hydroxylase 4

3.51

−4.53

5.74E-03

−6.17

7.33E-03

1.36

8.60E-01

evm.model.supercontig_444.5

Beta-glucosidase 27-like

1.15

−10.02

2.50E-02

−5.43

3.00E-01

−1.85

8.20E-01

evm.model.supercontig_189.36

Beta-glucosidase 32-like

2.34

−17.19

7.54E-03

−3.89

3.65E-01

−4.42

1.15E-01

evm.model.supercontig_1.155

Cytochrome P450 85A-like/ Brassinosteroid-6-oxidase 2 (CYP85A2, BR6OX2)

−0.77

−60.77

3.13E-02

−8.79

7.56E-01

−6.91

2.89E-01

  1. aDifferentially expressed genes parameters: Fold-Change (FC) > 2 or < − 2 and a False Discovery Rate (FDR) < 0.05