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Table 7 The number for the candidate genes in the confidence intervals of the stable QTLs

From: A high-density genetic map constructed using specific length amplified fragment (SLAF) sequencing and QTL mapping of seed-related traits in sesame (Sesamum indicum L.)

Genetic information

Gene number

ALL annotation

COG annotation

GO annotation

KEGG annotation

Trait

QTL

Linkage Group ID

QTL region (cM)

Seed coat color

qsccL*4

LG04

78.19–78.68

10

10

1

8

4

 

qsccL4

       
 

qsccb*4

       
 

qscca*4

LG04

79.58–79.99

49

48

14

34

6

 

qscca4–2

 

qsccL4

LG04

80.89–81.38

2

2

0

2

2

 

qscca4–1

 

qsccX4

 

qsccY4

 

qsccb4

 

qscca*9

LG09

80.47–90.56

22

22

9

15

9

 

qsccY9

LG09

101.72–103.68

74

73

20

48

7

 

qsccZ9

LG09

90.56–90.97

0

0

0

0

0

 

qsccZ12

LG12

159.98–161.95

2

2

0

1

0

Seed size

qsa1

LG01

36.27–41.19

31

30

10

26

9

 

qsw1

 

ql/w1

LG01

172.85–173.34

2

2

0

2

1

 

qsc1

LG01

183.42–183.92

1

1

0

1

1

 

ql/w2

LG02

16.77–17.26

0

0

0

0

0

 

qsc2

 

qsw5

LG05

22.27–22.27

61

54

20

45

11

 

qsd5

 

qsp11

LG11

164.51–165.41

8

8

4

6

3

 

qsa11

LG11

165.41–166.23

11

11

6

8

3

 

qsl11

 

qsw11

 

qsd11

 

qsl13

LG13

66.41–66.90

11

10

8

9

4

Thousand seed weight

qtsw4

LG04

57.19–57.69

18

15

5

11

1

 

qtsw9

LG09

120.45–120.86

117

112

49

84

26

 

qtsw12

LG12

124.45–124.92

50

39

12

28

7

Total

   

469

439

158

328

94

  1. *QTLs were listed with the R2 ≥ 5%