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Table 1 Summary of SNPs obtained in different genotypes

From: ddRAD sequencing-based identification of inter-genepool SNPs and association analysis in Brassica juncea

Samples

Total Reads

Total of reads after pre-processing

No. of reads mapped

Percent reads mapped

Percent uniquely mapped reads

SNPs at 10x coverage

Zem 1

2,310,662

2,291,416

2,156,974

94.13

83.60

1251

Donskaja IV

2,361,678

2,350,360

2,201,589

93.67

83.72

1273

EC- 287711

3,462,876

3,437,132

3,231,248

94.03

84.19

1860

Pusa Tarak

7,521,368

7,438,610

6,885,178

92.56

83.25

2127

Urvashi

3,731,080

3,714,434

3,504,568

94.35

81.37

1898

RSPR-01

3,621,796

3,597,428

3,375,826

93.84

82.50

1990